[Ncep.list.nems.announce] Follow-up commit to NEMS trunk for ticket #41 NUOPC/OCN integration
Gerhard Theurich
theurich at sourcespring.net
Fri Aug 30 15:27:35 UTC 2013
Hi Moorthi,
Okay, sounds like all is good then?
Just curious, are you trying to look into the NUOPC parts of the NEMS
code, i.e. run "./RT.sh nuopc test" in the end? If so you have to
configure NEMS with "./esmf_version nuopc_zeus", and you must have
loaded the esmf/6.2.0 module.
-Gerhard
On 08/30/2013 08:19 AM, Shrinivas Moorthi wrote:
> Gerhard,
> It turns out I have load ESMF module (Raghu helped me out).
> Moorthi
> On 08/30/2013 10:06 AM, Gerhard Theurich wrote:
>> Hi Moorthi,
>>
>> This looks like a mismatch between the NEMS configuration, and the
>> ESMF library loaded. What NEMS configuration are you using (i.e, what
>> option did you use with ./esmf_version)? Are you building NEMS by
>> directly calling "make <target>", or is this out of the regression
>> suite? If you are building directly, what modules do you have loaded
>> (see "module list")? Thanks,
>>
>> -Gerhard
>>
>>
>> On 08/30/2013 05:32 AM, Shrinivas Moorthi wrote:
>>> All,
>>> I am trying to compile NEMS on zeus and I am getting errors (I
>>> guess
>>> for ESMF library)
>>>
>>> "ifort -lmpi -openmp -convert big_endian -assume byterecl
>>> -mkl=sequential "-g -check all -ftrapuv -stack-check -fstack-protector
>>> -heap-arrays -recursive" -I/contrib/nceplibs/nwprod/lib/incmod/nemsio
>>> -fp-model strict -c module_ERR_MSG.f90
>>> ifort: command line warning #10156: ignoring option '-g'; no argument
>>> required
>>> module_ERR_MSG.f90(61): error #7002: Error in opening the compiled
>>> module file. Check INCLUDE paths. [ESMF_MOD]"
>>>
>>> What am I missing?
>>> Thanks
>>> Moorthi
>>> On 08/23/2013 12:55 PM, Gerhard Theurich wrote:
>>>> Hi Nicole,
>>>>
>>>> Yes, the change was made consistently across _all_ build targets. You
>>>> can see them all by just typing "make" (without specifying a target).
>>>> This will print out the help message that shows the available targets.
>>>>
>>>> -Gerhard
>>>>
>>>> On 08/23/2013 09:48 AM, Nicole McKee - NOAA Affiliate wrote:
>>>>> Would the 'gsm' part also be used for other compilations, as well?
>>>>> Like
>>>>> 'gmake nmm_gsm', for example?
>>>>>
>>>>>
>>>>>
>>>>> Nicole McKee
>>>>> IMSG/NCEP-EMC Global Modeling Branch
>>>>> 301-683-3812
>>>>>
>>>>>
>>>>> On Wed, Aug 14, 2013 at 9:53 AM, Gerhard Theurich
>>>>> <theurich at sourcespring.net <mailto:theurich at sourcespring.net>> wrote:
>>>>>
>>>>> That is correct, in my last commit I was trying to more
>>>>> consistently
>>>>> move to using "gsm" instead of "gfs". One thing was to
>>>>> replace "gfs"
>>>>> with "gsm" in all of the NEMS build targets. Another was that
>>>>> the old
>>>>> "gfs" sub-directory was removed.
>>>>> -Gerhard
>>>>>
>>>>> On 08/14/2013 06:29 AM, Sarah Lu - NOAA Affiliate wrote:
>>>>> >
>>>>> > Gerhard changed it to 'gmake gsm'.
>>>>> >
>>>>> >
>>>>> > On Wed, Aug 14, 2013 at 9:22 AM, Shrinivas Moorthi - NOAA
>>>>> Federal
>>>>> > <shrinivas.moorthi at noaa.gov
>>>>> <mailto:shrinivas.moorthi at noaa.gov>
>>>>> <mailto:shrinivas.moorthi at noaa.gov
>>>>> <mailto:shrinivas.moorthi at noaa.gov>>> wrote:
>>>>> >
>>>>> > I haven't touched NEMS for a while and now I try to
>>>>> compile
>>>>> ans it
>>>>> > does not work.
>>>>> > I get
>>>>> > "gmake gfs GOCART_MODE=full
>>>>> > gmake: *** No rule to make target `gfs'. Stop."
>>>>> >
>>>>> > What am I doing wrong?
>>>>> > Thanks
>>>>> > Moorthi
>>>>> >
>>>>> >
>>>>> >
>>>>> > On Fri, Aug 9, 2013 at 7:17 PM, Sarah Lu - NOAA Affiliate
>>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>>> >
>>>>> >
>>>>> > Thanks to Gerhard, the NEMS trunk has been
>>>>> pointed to GSM at
>>>>> > R30692. The two trunk are in sync.
>>>>> >
>>>>> > Have a nice weekend to you all,
>>>>> > Sarah
>>>>> >
>>>>> >
>>>>> > On Fri, Aug 9, 2013 at 6:30 PM, Sarah Lu - NOAA
>>>>> Affiliate
>>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>>> >
>>>>> > Dear all --
>>>>> >
>>>>> > Both GSM and NEMS trunks have been updated
>>>>> (R30692
>>>>> for GSM
>>>>> > and R30711 for NEMS).
>>>>> >
>>>>> > However, I notice the NEMS's external link is
>>>>> pointed
>>>>> to GSM
>>>>> > trunk at R30596. Could someone please help
>>>>> me to
>>>>> sync the
>>>>> > code so the NEMS trunk can point to the tip of
>>>>> GSM trunk.
>>>>> >
>>>>> > Thanks,
>>>>> > Sarah
>>>>> >
>>>>> >
>>>>> > On Fri, Aug 9, 2013 at 1:13 PM, Sarah Lu -
>>>>> NOAA Affiliate
>>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>>> >
>>>>> > Dear All --
>>>>> >
>>>>> > Kate will update GSM trunk this afternoon,
>>>>> and
>>>>> I'll then
>>>>> > update the NEMS trunk. The code changes
>>>>> are to
>>>>> restore
>>>>> > post quilting regression tests at Zeus and
>>>>> WCOSS. No
>>>>> > impact for standard regression test package.
>>>>> >
>>>>> > A list of code changes are:
>>>>> > M src/atmos/post/post_nmm.f
>>>>> > M src/atmos/post/post_gfs.f
>>>>> > M src/conf/configure.nems.Zeus.intel
>>>>> > M job/exngac_fcst.sh.sms
>>>>> > M job/regression_tests/RT.sh_IN
>>>>> > M
>>>>> job/regression_tests/JNGAC_FORECAST.sms.para
>>>>> > M
>>>>> job/regression_tests/nmm_conf/nmm_reg_run.IN
>>>>> > M job/regression_tests/rt_gocart.sh
>>>>> > M job/regression_tests/Compile_wcoss.log
>>>>> > M job/regression_tests/ngac_bsub.IN
>>>>> > M job/regression_tests/rt_gfs.sh
>>>>> > M
>>>>> job/regression_tests/RegressionTests_wcoss.log
>>>>> > M job/regression_tests/gfs_fcst_run.IN_Linux
>>>>> > M job/regression_tests/ngac_qsub.IN
>>>>> > M job/regression_tests/gfs_fcst_run.IN_IBM
>>>>> > M job/exglobal_fcst.sh.sms_nems
>>>>> >
>>>>> > Please let me know if you have any
>>>>> questions or need
>>>>> > additional info.
>>>>> >
>>>>> > Thanks,
>>>>> > Sarah
>>>>> >
>>>>> >
>>>>> > On Wed, Aug 7, 2013 at 2:04 PM, Sarah Lu -
>>>>> NOAA
>>>>> > Affiliate <sarah.lu at noaa.gov
>>>>> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
>>>>> <mailto:sarah.lu at noaa.gov>>>
>>>>> > wrote:
>>>>> >
>>>>> >
>>>>> > After Gerhard's commit, I'll commit code
>>>>> changes to
>>>>> > restore post_quilting regression tests
>>>>> in NEMS.
>>>>> > (NEMS ticket #46 and GSM ticket #23)
>>>>> >
>>>>> > My proposed code changes can be found at:
>>>>> >
>>>>> https://svnemc.ncep.noaa.gov/projects/nems/branches/sarah/trunk_quilting
>>>>>
>>>>> > https://svnemc.ncep.noaa.gov/projects/gsm/branches/ticket_23
>>>>> >
>>>>> > The working copy at Zeus and Tide:
>>>>> >
>>>>> /scratch2/portfolios/NCEPDEV/global/save/Sarah.Lu/NEMS/trunk_quilting
>>>>> > /global/save/Sarah.Lu/NEMS/trunk_quilting
>>>>> >
>>>>> >
>>>>> > On Wed, Aug 7, 2013 at 12:23 PM,
>>>>> Gerhard Theurich
>>>>> > <theurich at sourcespring.net
>>>>> <mailto:theurich at sourcespring.net>
>>>>> > <mailto:theurich at sourcespring.net
>>>>> <mailto:theurich at sourcespring.net>>> wrote:
>>>>> >
>>>>> > Hi,
>>>>> >
>>>>> > This is a follow-up commit to the
>>>>> previous
>>>>> > commit I made to the NEMS
>>>>> > trunk on 08/02/13.
>>>>> >
>>>>> > (1) Now that the associated "gsm"
>>>>> changes are
>>>>> > merged onto the GSM trunk
>>>>> > (thank you Kate!), I would like to
>>>>> point the
>>>>> > "src/atmos/gsm" subdir to
>>>>> > the current revision of the GSM
>>>>> trunk.
>>>>> >
>>>>> > (2) A few house cleaning items:
>>>>> > - Remove deprecated subdirs
>>>>> "src/atmos/gfs" and
>>>>> > "src/ocean".
>>>>> > - Change use of "gfs" in favor of
>>>>> "gsm"
>>>>> in build
>>>>> > targets and ATM core
>>>>> > specification.
>>>>> >
>>>>> > (3) Add the file "nems.configure.IN
>>>>> <http://nems.configure.IN>
>>>>> > <http://nems.configure.IN>" that I had
>>>>> forgotten
>>>>> > to add in my
>>>>> > previous commit. This causes
>>>>> currently a
>>>>> warning
>>>>> > in the regular
>>>>> > regression testing (but no errors
>>>>> or bail
>>>>> outs).
>>>>> > However, the "nuopc
>>>>> > test" option does depend on this
>>>>> file.
>>>>> >
>>>>> > Code changes and test results are
>>>>> available on
>>>>> > Zeus under:
>>>>> >
>>>>> /home/Gerhard.Theurich/NEMS.trunk30446-working
>>>>> >
>>>>> > The modifications in detail:
>>>>> >
>>>>> > _M src/atmos
>>>>> > -> set svn:externals
>>>>> property to "gsm
>>>>> > -r30596
>>>>> > https://svnemc.ncep.noaa.gov/projects/gsm/trunk"
>>>>> > D src/atmos/gfs
>>>>> > -> remove deprecated "gfs"
>>>>> directory
>>>>> > M src/atmos/module_ATM_GRID_COMP.F90
>>>>> > -> support "gfs" and "gsm" as
>>>>> settings
>>>>> > for the ATM core/model
>>>>> > D src/ocean
>>>>> > -> remove deprecated "ocean"
>>>>> directory
>>>>> > M src/makefile
>>>>> > -> replace "gfs" with
>>>>> "gsm" in
>>>>> all build
>>>>> > targets
>>>>> > M job/regression_tests/RT.sh_IN
>>>>> > -> adjust to the build
>>>>> targets change
>>>>> > A
>>>>> job/regression_tests/nems.configure.IN
>>>>> <http://nems.configure.IN>
>>>>> > <http://nems.configure.IN>
>>>>> > -> added template file
>>>>> that is needed
>>>>> > for NUOPC mode and was
>>>>> > forgotten before
>>>>> > M
>>>>> job/regression_tests/RegressionTests_zeus.log
>>>>> > -> updated output file
>>>>> > M
>>>>> job/regression_tests/Compile_zeus.log
>>>>> > -> updated output file
>>>>> >
>>>>> > -Gerhard
>>>>> >
>>>>> _______________________________________________
>>>>> > Ncep.list.nems.announce mailing list
>>>>> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
>>>>> >
>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>
>>>>> >
>>>>> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > _______________________________________________
>>>>> > Ncep.list.nems.announce mailing list
>>>>> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
>>>>> > <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>
>>>>> >
>>>>> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > --
>>>>> > Dr. Shrinivas Moorthi
>>>>> > Research Meteorologist
>>>>> > Global Climate and Weather Modeling Branch
>>>>> > Environmental Modeling Center / National Centers for
>>>>> Environmental
>>>>> > Prediction
>>>>> > 5830 University Research Court - (W/NP23), College
>>>>> Park MD
>>>>> 20740 USA
>>>>> > Tel: (301)683-3718 <tel:%28301%29683-3718>
>>>>> >
>>>>> > e-mail: Shrinivas.Moorthi at noaa.gov
>>>>> <mailto:Shrinivas.Moorthi at noaa.gov>
>>>>> <mailto:Shrinivas.Moorthi at noaa.gov
>>>>> <mailto:Shrinivas.Moorthi at noaa.gov>>
>>>>> > Phone: (301) 683-3718 <tel:%28301%29%20683-3718> Fax:
>>>>> (301)
>>>>> > 683-3718 <tel:%28301%29%20683-3718>
>>>>> >
>>>>> >
>>>>> >
>>>>> >
>>>>> > _______________________________________________
>>>>> > Ncep.list.nems.announce mailing list
>>>>> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
>>>>> >
>>>>> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>>>>> >
>>>>> _______________________________________________
>>>>> Ncep.list.nems.announce mailing list
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>>>>>
>>>>>
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