[Ncep.list.nems.announce] Follow-up commit to NEMS trunk for ticket #41 NUOPC/OCN integration
Shrinivas Moorthi
shrinivas.moorthi at noaa.gov
Fri Aug 30 15:37:36 UTC 2013
Gerhard,
No, I am merging new gfs physics. I was testing on wcoss, and there
is a bug that I can't find.
So I want to test on zeus hoping to find the bug.
Moorthi
On 08/30/2013 11:27 AM, Gerhard Theurich wrote:
> Hi Moorthi,
>
> Okay, sounds like all is good then?
>
> Just curious, are you trying to look into the NUOPC parts of the NEMS
> code, i.e. run "./RT.sh nuopc test" in the end? If so you have to
> configure NEMS with "./esmf_version nuopc_zeus", and you must have
> loaded the esmf/6.2.0 module.
>
> -Gerhard
>
> On 08/30/2013 08:19 AM, Shrinivas Moorthi wrote:
>> Gerhard,
>> It turns out I have load ESMF module (Raghu helped me out).
>> Moorthi
>> On 08/30/2013 10:06 AM, Gerhard Theurich wrote:
>>> Hi Moorthi,
>>>
>>> This looks like a mismatch between the NEMS configuration, and the
>>> ESMF library loaded. What NEMS configuration are you using (i.e, what
>>> option did you use with ./esmf_version)? Are you building NEMS by
>>> directly calling "make <target>", or is this out of the regression
>>> suite? If you are building directly, what modules do you have loaded
>>> (see "module list")? Thanks,
>>>
>>> -Gerhard
>>>
>>>
>>> On 08/30/2013 05:32 AM, Shrinivas Moorthi wrote:
>>>> All,
>>>> I am trying to compile NEMS on zeus and I am getting errors (I
>>>> guess
>>>> for ESMF library)
>>>>
>>>> "ifort -lmpi -openmp -convert big_endian -assume byterecl
>>>> -mkl=sequential "-g -check all -ftrapuv -stack-check -fstack-protector
>>>> -heap-arrays -recursive" -I/contrib/nceplibs/nwprod/lib/incmod/nemsio
>>>> -fp-model strict -c module_ERR_MSG.f90
>>>> ifort: command line warning #10156: ignoring option '-g'; no argument
>>>> required
>>>> module_ERR_MSG.f90(61): error #7002: Error in opening the compiled
>>>> module file. Check INCLUDE paths. [ESMF_MOD]"
>>>>
>>>> What am I missing?
>>>> Thanks
>>>> Moorthi
>>>> On 08/23/2013 12:55 PM, Gerhard Theurich wrote:
>>>>> Hi Nicole,
>>>>>
>>>>> Yes, the change was made consistently across _all_ build targets. You
>>>>> can see them all by just typing "make" (without specifying a target).
>>>>> This will print out the help message that shows the available
>>>>> targets.
>>>>>
>>>>> -Gerhard
>>>>>
>>>>> On 08/23/2013 09:48 AM, Nicole McKee - NOAA Affiliate wrote:
>>>>>> Would the 'gsm' part also be used for other compilations, as well?
>>>>>> Like
>>>>>> 'gmake nmm_gsm', for example?
>>>>>>
>>>>>>
>>>>>>
>>>>>> Nicole McKee
>>>>>> IMSG/NCEP-EMC Global Modeling Branch
>>>>>> 301-683-3812
>>>>>>
>>>>>>
>>>>>> On Wed, Aug 14, 2013 at 9:53 AM, Gerhard Theurich
>>>>>> <theurich at sourcespring.net <mailto:theurich at sourcespring.net>>
>>>>>> wrote:
>>>>>>
>>>>>> That is correct, in my last commit I was trying to more
>>>>>> consistently
>>>>>> move to using "gsm" instead of "gfs". One thing was to
>>>>>> replace "gfs"
>>>>>> with "gsm" in all of the NEMS build targets. Another was that
>>>>>> the old
>>>>>> "gfs" sub-directory was removed.
>>>>>> -Gerhard
>>>>>>
>>>>>> On 08/14/2013 06:29 AM, Sarah Lu - NOAA Affiliate wrote:
>>>>>> >
>>>>>> > Gerhard changed it to 'gmake gsm'.
>>>>>> >
>>>>>> >
>>>>>> > On Wed, Aug 14, 2013 at 9:22 AM, Shrinivas Moorthi - NOAA
>>>>>> Federal
>>>>>> > <shrinivas.moorthi at noaa.gov
>>>>>> <mailto:shrinivas.moorthi at noaa.gov>
>>>>>> <mailto:shrinivas.moorthi at noaa.gov
>>>>>> <mailto:shrinivas.moorthi at noaa.gov>>> wrote:
>>>>>> >
>>>>>> > I haven't touched NEMS for a while and now I try to
>>>>>> compile
>>>>>> ans it
>>>>>> > does not work.
>>>>>> > I get
>>>>>> > "gmake gfs GOCART_MODE=full
>>>>>> > gmake: *** No rule to make target `gfs'. Stop."
>>>>>> >
>>>>>> > What am I doing wrong?
>>>>>> > Thanks
>>>>>> > Moorthi
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> > On Fri, Aug 9, 2013 at 7:17 PM, Sarah Lu - NOAA
>>>>>> Affiliate
>>>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>>>> >
>>>>>> >
>>>>>> > Thanks to Gerhard, the NEMS trunk has been
>>>>>> pointed to GSM at
>>>>>> > R30692. The two trunk are in sync.
>>>>>> >
>>>>>> > Have a nice weekend to you all,
>>>>>> > Sarah
>>>>>> >
>>>>>> >
>>>>>> > On Fri, Aug 9, 2013 at 6:30 PM, Sarah Lu - NOAA
>>>>>> Affiliate
>>>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>>>> >
>>>>>> > Dear all --
>>>>>> >
>>>>>> > Both GSM and NEMS trunks have been updated
>>>>>> (R30692
>>>>>> for GSM
>>>>>> > and R30711 for NEMS).
>>>>>> >
>>>>>> > However, I notice the NEMS's external link is
>>>>>> pointed
>>>>>> to GSM
>>>>>> > trunk at R30596. Could someone please help
>>>>>> me to
>>>>>> sync the
>>>>>> > code so the NEMS trunk can point to the tip of
>>>>>> GSM trunk.
>>>>>> >
>>>>>> > Thanks,
>>>>>> > Sarah
>>>>>> >
>>>>>> >
>>>>>> > On Fri, Aug 9, 2013 at 1:13 PM, Sarah Lu -
>>>>>> NOAA Affiliate
>>>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>>>> >
>>>>>> > Dear All --
>>>>>> >
>>>>>> > Kate will update GSM trunk this afternoon,
>>>>>> and
>>>>>> I'll then
>>>>>> > update the NEMS trunk. The code changes
>>>>>> are to
>>>>>> restore
>>>>>> > post quilting regression tests at Zeus and
>>>>>> WCOSS. No
>>>>>> > impact for standard regression test
>>>>>> package.
>>>>>> >
>>>>>> > A list of code changes are:
>>>>>> > M src/atmos/post/post_nmm.f
>>>>>> > M src/atmos/post/post_gfs.f
>>>>>> > M src/conf/configure.nems.Zeus.intel
>>>>>> > M job/exngac_fcst.sh.sms
>>>>>> > M job/regression_tests/RT.sh_IN
>>>>>> > M
>>>>>> job/regression_tests/JNGAC_FORECAST.sms.para
>>>>>> > M
>>>>>> job/regression_tests/nmm_conf/nmm_reg_run.IN
>>>>>> > M job/regression_tests/rt_gocart.sh
>>>>>> > M job/regression_tests/Compile_wcoss.log
>>>>>> > M job/regression_tests/ngac_bsub.IN
>>>>>> > M job/regression_tests/rt_gfs.sh
>>>>>> > M
>>>>>> job/regression_tests/RegressionTests_wcoss.log
>>>>>> > M
>>>>>> job/regression_tests/gfs_fcst_run.IN_Linux
>>>>>> > M job/regression_tests/ngac_qsub.IN
>>>>>> > M job/regression_tests/gfs_fcst_run.IN_IBM
>>>>>> > M job/exglobal_fcst.sh.sms_nems
>>>>>> >
>>>>>> > Please let me know if you have any
>>>>>> questions or need
>>>>>> > additional info.
>>>>>> >
>>>>>> > Thanks,
>>>>>> > Sarah
>>>>>> >
>>>>>> >
>>>>>> > On Wed, Aug 7, 2013 at 2:04 PM, Sarah Lu -
>>>>>> NOAA
>>>>>> > Affiliate <sarah.lu at noaa.gov
>>>>>> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
>>>>>> <mailto:sarah.lu at noaa.gov>>>
>>>>>> > wrote:
>>>>>> >
>>>>>> >
>>>>>> > After Gerhard's commit, I'll commit
>>>>>> code
>>>>>> changes to
>>>>>> > restore post_quilting regression tests
>>>>>> in NEMS.
>>>>>> > (NEMS ticket #46 and GSM ticket #23)
>>>>>> >
>>>>>> > My proposed code changes can be
>>>>>> found at:
>>>>>> >
>>>>>> https://svnemc.ncep.noaa.gov/projects/nems/branches/sarah/trunk_quilting
>>>>>>
>>>>>>
>>>>>> >
>>>>>> https://svnemc.ncep.noaa.gov/projects/gsm/branches/ticket_23
>>>>>> >
>>>>>> > The working copy at Zeus and Tide:
>>>>>> >
>>>>>> /scratch2/portfolios/NCEPDEV/global/save/Sarah.Lu/NEMS/trunk_quilting
>>>>>>
>>>>>> > /global/save/Sarah.Lu/NEMS/trunk_quilting
>>>>>> >
>>>>>> >
>>>>>> > On Wed, Aug 7, 2013 at 12:23 PM,
>>>>>> Gerhard Theurich
>>>>>> > <theurich at sourcespring.net
>>>>>> <mailto:theurich at sourcespring.net>
>>>>>> > <mailto:theurich at sourcespring.net
>>>>>> <mailto:theurich at sourcespring.net>>> wrote:
>>>>>> >
>>>>>> > Hi,
>>>>>> >
>>>>>> > This is a follow-up commit to the
>>>>>> previous
>>>>>> > commit I made to the NEMS
>>>>>> > trunk on 08/02/13.
>>>>>> >
>>>>>> > (1) Now that the associated "gsm"
>>>>>> changes are
>>>>>> > merged onto the GSM trunk
>>>>>> > (thank you Kate!), I would like to
>>>>>> point the
>>>>>> > "src/atmos/gsm" subdir to
>>>>>> > the current revision of the GSM
>>>>>> trunk.
>>>>>> >
>>>>>> > (2) A few house cleaning items:
>>>>>> > - Remove deprecated subdirs
>>>>>> "src/atmos/gfs" and
>>>>>> > "src/ocean".
>>>>>> > - Change use of "gfs" in favor of
>>>>>> "gsm"
>>>>>> in build
>>>>>> > targets and ATM core
>>>>>> > specification.
>>>>>> >
>>>>>> > (3) Add the file "nems.configure.IN
>>>>>> <http://nems.configure.IN>
>>>>>> > <http://nems.configure.IN>" that I had
>>>>>> forgotten
>>>>>> > to add in my
>>>>>> > previous commit. This causes
>>>>>> currently a
>>>>>> warning
>>>>>> > in the regular
>>>>>> > regression testing (but no errors
>>>>>> or bail
>>>>>> outs).
>>>>>> > However, the "nuopc
>>>>>> > test" option does depend on this
>>>>>> file.
>>>>>> >
>>>>>> > Code changes and test results are
>>>>>> available on
>>>>>> > Zeus under:
>>>>>> >
>>>>>> /home/Gerhard.Theurich/NEMS.trunk30446-working
>>>>>> >
>>>>>> > The modifications in detail:
>>>>>> >
>>>>>> > _M src/atmos
>>>>>> > -> set svn:externals
>>>>>> property to "gsm
>>>>>> > -r30596
>>>>>> > https://svnemc.ncep.noaa.gov/projects/gsm/trunk"
>>>>>> > D src/atmos/gfs
>>>>>> > -> remove deprecated "gfs"
>>>>>> directory
>>>>>> > M
>>>>>> src/atmos/module_ATM_GRID_COMP.F90
>>>>>> > -> support "gfs" and
>>>>>> "gsm" as
>>>>>> settings
>>>>>> > for the ATM core/model
>>>>>> > D src/ocean
>>>>>> > -> remove deprecated
>>>>>> "ocean"
>>>>>> directory
>>>>>> > M src/makefile
>>>>>> > -> replace "gfs" with
>>>>>> "gsm" in
>>>>>> all build
>>>>>> > targets
>>>>>> > M job/regression_tests/RT.sh_IN
>>>>>> > -> adjust to the build
>>>>>> targets change
>>>>>> > A
>>>>>> job/regression_tests/nems.configure.IN
>>>>>> <http://nems.configure.IN>
>>>>>> > <http://nems.configure.IN>
>>>>>> > -> added template file
>>>>>> that is needed
>>>>>> > for NUOPC mode and was
>>>>>> > forgotten before
>>>>>> > M
>>>>>> job/regression_tests/RegressionTests_zeus.log
>>>>>> > -> updated output file
>>>>>> > M
>>>>>> job/regression_tests/Compile_zeus.log
>>>>>> > -> updated output file
>>>>>> >
>>>>>> > -Gerhard
>>>>>> >
>>>>>> _______________________________________________
>>>>>> > Ncep.list.nems.announce mailing list
>>>>>> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
>>>>>> >
>>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>
>>>>>> >
>>>>>> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>>>>>>
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> > _______________________________________________
>>>>>> > Ncep.list.nems.announce mailing list
>>>>>> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
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>>>>>> >
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>>>>>>
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> > --
>>>>>> > Dr. Shrinivas Moorthi
>>>>>> > Research Meteorologist
>>>>>> > Global Climate and Weather Modeling Branch
>>>>>> > Environmental Modeling Center / National Centers for
>>>>>> Environmental
>>>>>> > Prediction
>>>>>> > 5830 University Research Court - (W/NP23), College
>>>>>> Park MD
>>>>>> 20740 USA
>>>>>> > Tel: (301)683-3718 <tel:%28301%29683-3718>
>>>>>> >
>>>>>> > e-mail: Shrinivas.Moorthi at noaa.gov
>>>>>> <mailto:Shrinivas.Moorthi at noaa.gov>
>>>>>> <mailto:Shrinivas.Moorthi at noaa.gov
>>>>>> <mailto:Shrinivas.Moorthi at noaa.gov>>
>>>>>> > Phone: (301) 683-3718 <tel:%28301%29%20683-3718> Fax:
>>>>>> (301)
>>>>>> > 683-3718 <tel:%28301%29%20683-3718>
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> >
>>>>>> > _______________________________________________
>>>>>> > Ncep.list.nems.announce mailing list
>>>>>> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
>>>>>> >
>>>>>> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>>>>>>
>>>>>> >
>>>>>> _______________________________________________
>>>>>> Ncep.list.nems.announce mailing list
>>>>>> Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>>> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
>>>>>> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>>>>>>
>>>>>>
>>>>>>
>>>>> _______________________________________________
>>>>> Ncep.list.nems.announce mailing list
>>>>> Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
>>>>> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>>>>
>>>>
>>
>>
--
Dr. Shrinivas Moorthi
Research Meteorologist
Global Climate and Weather Modeling Branch
Environmental Modeling Center / National Centers for Environmental Prediction
5830 University Research Court - (W/NP23), College Park MD 20740 USA
Tel:(301)683-3718
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