[Ncep.list.nems.announce] Follow-up commit to NEMS trunk for ticket #41 NUOPC/OCN integration
Shrinivas Moorthi
shrinivas.moorthi at noaa.gov
Fri Aug 30 15:19:53 UTC 2013
Gerhard,
It turns out I have load ESMF module (Raghu helped me out).
Moorthi
On 08/30/2013 10:06 AM, Gerhard Theurich wrote:
> Hi Moorthi,
>
> This looks like a mismatch between the NEMS configuration, and the
> ESMF library loaded. What NEMS configuration are you using (i.e, what
> option did you use with ./esmf_version)? Are you building NEMS by
> directly calling "make <target>", or is this out of the regression
> suite? If you are building directly, what modules do you have loaded
> (see "module list")? Thanks,
>
> -Gerhard
>
>
> On 08/30/2013 05:32 AM, Shrinivas Moorthi wrote:
>> All,
>> I am trying to compile NEMS on zeus and I am getting errors (I
>> guess
>> for ESMF library)
>>
>> "ifort -lmpi -openmp -convert big_endian -assume byterecl
>> -mkl=sequential "-g -check all -ftrapuv -stack-check -fstack-protector
>> -heap-arrays -recursive" -I/contrib/nceplibs/nwprod/lib/incmod/nemsio
>> -fp-model strict -c module_ERR_MSG.f90
>> ifort: command line warning #10156: ignoring option '-g'; no argument
>> required
>> module_ERR_MSG.f90(61): error #7002: Error in opening the compiled
>> module file. Check INCLUDE paths. [ESMF_MOD]"
>>
>> What am I missing?
>> Thanks
>> Moorthi
>> On 08/23/2013 12:55 PM, Gerhard Theurich wrote:
>>> Hi Nicole,
>>>
>>> Yes, the change was made consistently across _all_ build targets. You
>>> can see them all by just typing "make" (without specifying a target).
>>> This will print out the help message that shows the available targets.
>>>
>>> -Gerhard
>>>
>>> On 08/23/2013 09:48 AM, Nicole McKee - NOAA Affiliate wrote:
>>>> Would the 'gsm' part also be used for other compilations, as well?
>>>> Like
>>>> 'gmake nmm_gsm', for example?
>>>>
>>>>
>>>>
>>>> Nicole McKee
>>>> IMSG/NCEP-EMC Global Modeling Branch
>>>> 301-683-3812
>>>>
>>>>
>>>> On Wed, Aug 14, 2013 at 9:53 AM, Gerhard Theurich
>>>> <theurich at sourcespring.net <mailto:theurich at sourcespring.net>> wrote:
>>>>
>>>> That is correct, in my last commit I was trying to more
>>>> consistently
>>>> move to using "gsm" instead of "gfs". One thing was to
>>>> replace "gfs"
>>>> with "gsm" in all of the NEMS build targets. Another was that
>>>> the old
>>>> "gfs" sub-directory was removed.
>>>> -Gerhard
>>>>
>>>> On 08/14/2013 06:29 AM, Sarah Lu - NOAA Affiliate wrote:
>>>> >
>>>> > Gerhard changed it to 'gmake gsm'.
>>>> >
>>>> >
>>>> > On Wed, Aug 14, 2013 at 9:22 AM, Shrinivas Moorthi - NOAA
>>>> Federal
>>>> > <shrinivas.moorthi at noaa.gov
>>>> <mailto:shrinivas.moorthi at noaa.gov>
>>>> <mailto:shrinivas.moorthi at noaa.gov
>>>> <mailto:shrinivas.moorthi at noaa.gov>>> wrote:
>>>> >
>>>> > I haven't touched NEMS for a while and now I try to
>>>> compile
>>>> ans it
>>>> > does not work.
>>>> > I get
>>>> > "gmake gfs GOCART_MODE=full
>>>> > gmake: *** No rule to make target `gfs'. Stop."
>>>> >
>>>> > What am I doing wrong?
>>>> > Thanks
>>>> > Moorthi
>>>> >
>>>> >
>>>> >
>>>> > On Fri, Aug 9, 2013 at 7:17 PM, Sarah Lu - NOAA Affiliate
>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>> >
>>>> >
>>>> > Thanks to Gerhard, the NEMS trunk has been
>>>> pointed to GSM at
>>>> > R30692. The two trunk are in sync.
>>>> >
>>>> > Have a nice weekend to you all,
>>>> > Sarah
>>>> >
>>>> >
>>>> > On Fri, Aug 9, 2013 at 6:30 PM, Sarah Lu - NOAA
>>>> Affiliate
>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>> >
>>>> > Dear all --
>>>> >
>>>> > Both GSM and NEMS trunks have been updated
>>>> (R30692
>>>> for GSM
>>>> > and R30711 for NEMS).
>>>> >
>>>> > However, I notice the NEMS's external link is
>>>> pointed
>>>> to GSM
>>>> > trunk at R30596. Could someone please help
>>>> me to
>>>> sync the
>>>> > code so the NEMS trunk can point to the tip of
>>>> GSM trunk.
>>>> >
>>>> > Thanks,
>>>> > Sarah
>>>> >
>>>> >
>>>> > On Fri, Aug 9, 2013 at 1:13 PM, Sarah Lu -
>>>> NOAA Affiliate
>>>> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>>>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>> wrote:
>>>> >
>>>> > Dear All --
>>>> >
>>>> > Kate will update GSM trunk this afternoon,
>>>> and
>>>> I'll then
>>>> > update the NEMS trunk. The code changes
>>>> are to
>>>> restore
>>>> > post quilting regression tests at Zeus and
>>>> WCOSS. No
>>>> > impact for standard regression test package.
>>>> >
>>>> > A list of code changes are:
>>>> > M src/atmos/post/post_nmm.f
>>>> > M src/atmos/post/post_gfs.f
>>>> > M src/conf/configure.nems.Zeus.intel
>>>> > M job/exngac_fcst.sh.sms
>>>> > M job/regression_tests/RT.sh_IN
>>>> > M
>>>> job/regression_tests/JNGAC_FORECAST.sms.para
>>>> > M
>>>> job/regression_tests/nmm_conf/nmm_reg_run.IN
>>>> > M job/regression_tests/rt_gocart.sh
>>>> > M job/regression_tests/Compile_wcoss.log
>>>> > M job/regression_tests/ngac_bsub.IN
>>>> > M job/regression_tests/rt_gfs.sh
>>>> > M
>>>> job/regression_tests/RegressionTests_wcoss.log
>>>> > M job/regression_tests/gfs_fcst_run.IN_Linux
>>>> > M job/regression_tests/ngac_qsub.IN
>>>> > M job/regression_tests/gfs_fcst_run.IN_IBM
>>>> > M job/exglobal_fcst.sh.sms_nems
>>>> >
>>>> > Please let me know if you have any
>>>> questions or need
>>>> > additional info.
>>>> >
>>>> > Thanks,
>>>> > Sarah
>>>> >
>>>> >
>>>> > On Wed, Aug 7, 2013 at 2:04 PM, Sarah Lu -
>>>> NOAA
>>>> > Affiliate <sarah.lu at noaa.gov
>>>> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
>>>> <mailto:sarah.lu at noaa.gov>>>
>>>> > wrote:
>>>> >
>>>> >
>>>> > After Gerhard's commit, I'll commit code
>>>> changes to
>>>> > restore post_quilting regression tests
>>>> in NEMS.
>>>> > (NEMS ticket #46 and GSM ticket #23)
>>>> >
>>>> > My proposed code changes can be found at:
>>>> >
>>>> https://svnemc.ncep.noaa.gov/projects/nems/branches/sarah/trunk_quilting
>>>>
>>>> > https://svnemc.ncep.noaa.gov/projects/gsm/branches/ticket_23
>>>> >
>>>> > The working copy at Zeus and Tide:
>>>> >
>>>> /scratch2/portfolios/NCEPDEV/global/save/Sarah.Lu/NEMS/trunk_quilting
>>>> > /global/save/Sarah.Lu/NEMS/trunk_quilting
>>>> >
>>>> >
>>>> > On Wed, Aug 7, 2013 at 12:23 PM,
>>>> Gerhard Theurich
>>>> > <theurich at sourcespring.net
>>>> <mailto:theurich at sourcespring.net>
>>>> > <mailto:theurich at sourcespring.net
>>>> <mailto:theurich at sourcespring.net>>> wrote:
>>>> >
>>>> > Hi,
>>>> >
>>>> > This is a follow-up commit to the
>>>> previous
>>>> > commit I made to the NEMS
>>>> > trunk on 08/02/13.
>>>> >
>>>> > (1) Now that the associated "gsm"
>>>> changes are
>>>> > merged onto the GSM trunk
>>>> > (thank you Kate!), I would like to
>>>> point the
>>>> > "src/atmos/gsm" subdir to
>>>> > the current revision of the GSM
>>>> trunk.
>>>> >
>>>> > (2) A few house cleaning items:
>>>> > - Remove deprecated subdirs
>>>> "src/atmos/gfs" and
>>>> > "src/ocean".
>>>> > - Change use of "gfs" in favor of
>>>> "gsm"
>>>> in build
>>>> > targets and ATM core
>>>> > specification.
>>>> >
>>>> > (3) Add the file "nems.configure.IN
>>>> <http://nems.configure.IN>
>>>> > <http://nems.configure.IN>" that I had
>>>> forgotten
>>>> > to add in my
>>>> > previous commit. This causes
>>>> currently a
>>>> warning
>>>> > in the regular
>>>> > regression testing (but no errors
>>>> or bail
>>>> outs).
>>>> > However, the "nuopc
>>>> > test" option does depend on this
>>>> file.
>>>> >
>>>> > Code changes and test results are
>>>> available on
>>>> > Zeus under:
>>>> >
>>>> /home/Gerhard.Theurich/NEMS.trunk30446-working
>>>> >
>>>> > The modifications in detail:
>>>> >
>>>> > _M src/atmos
>>>> > -> set svn:externals
>>>> property to "gsm
>>>> > -r30596
>>>> > https://svnemc.ncep.noaa.gov/projects/gsm/trunk"
>>>> > D src/atmos/gfs
>>>> > -> remove deprecated "gfs"
>>>> directory
>>>> > M src/atmos/module_ATM_GRID_COMP.F90
>>>> > -> support "gfs" and "gsm" as
>>>> settings
>>>> > for the ATM core/model
>>>> > D src/ocean
>>>> > -> remove deprecated "ocean"
>>>> directory
>>>> > M src/makefile
>>>> > -> replace "gfs" with
>>>> "gsm" in
>>>> all build
>>>> > targets
>>>> > M job/regression_tests/RT.sh_IN
>>>> > -> adjust to the build
>>>> targets change
>>>> > A
>>>> job/regression_tests/nems.configure.IN
>>>> <http://nems.configure.IN>
>>>> > <http://nems.configure.IN>
>>>> > -> added template file
>>>> that is needed
>>>> > for NUOPC mode and was
>>>> > forgotten before
>>>> > M
>>>> job/regression_tests/RegressionTests_zeus.log
>>>> > -> updated output file
>>>> > M
>>>> job/regression_tests/Compile_zeus.log
>>>> > -> updated output file
>>>> >
>>>> > -Gerhard
>>>> >
>>>> _______________________________________________
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>>>> >
>>>> >
>>>> >
>>>> >
>>>> >
>>>> > _______________________________________________
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>>>> >
>>>> >
>>>> >
>>>> >
>>>> > --
>>>> > Dr. Shrinivas Moorthi
>>>> > Research Meteorologist
>>>> > Global Climate and Weather Modeling Branch
>>>> > Environmental Modeling Center / National Centers for
>>>> Environmental
>>>> > Prediction
>>>> > 5830 University Research Court - (W/NP23), College
>>>> Park MD
>>>> 20740 USA
>>>> > Tel: (301)683-3718 <tel:%28301%29683-3718>
>>>> >
>>>> > e-mail: Shrinivas.Moorthi at noaa.gov
>>>> <mailto:Shrinivas.Moorthi at noaa.gov>
>>>> <mailto:Shrinivas.Moorthi at noaa.gov
>>>> <mailto:Shrinivas.Moorthi at noaa.gov>>
>>>> > Phone: (301) 683-3718 <tel:%28301%29%20683-3718>
>>>> Fax: (301)
>>>> > 683-3718 <tel:%28301%29%20683-3718>
>>>> >
>>>> >
>>>> >
>>>> >
>>>> > _______________________________________________
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>>>> >
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>>
--
Dr. Shrinivas Moorthi
Research Meteorologist
Global Climate and Weather Modeling Branch
Environmental Modeling Center / National Centers for Environmental Prediction
5830 University Research Court - (W/NP23), College Park MD 20740 USA
Tel:(301)683-3718
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