[Ncep.list.nems.announce] Follow-up commit to NEMS trunk for ticket #41 NUOPC/OCN integration
Ratko Vasic
ratko.vasic at noaa.gov
Fri Aug 30 14:24:30 UTC 2013
Nicole,
You should run RT.sh, not RT.sh_IN
Ratko
On 8/30/2013 10:22 AM, Nicole McKee - NOAA Affiliate wrote:
> Gerhard,
>
> When trying to just submit RT.sh_IN, it would tell me model code was
> compiling, but then quickly just die. I tried compiling outside of the
> script, which was successful, and am now trying to run RT.sh_IN with
> my current compilation. But, shouldn't it all work properly by just
> running RT.sh_IN?
>
> Nicole
>
>
>
> Nicole McKee
> IMSG/NCEP-EMC Global Modeling Branch
> 301-683-3812
>
>
> On Fri, Aug 30, 2013 at 10:08 AM, Gerhard Theurich
> <theurich at sourcespring.net <mailto:theurich at sourcespring.net>> wrote:
>
> Hi Nicole,
>
> What issues are you seeing? There was a problem with the MOAB
> scheduler this morning on Zeus. Were your issues related to
> building NEMS out of RT.sh, or getting jobs running? I think the
> MOAB issues are settled now.
>
> -Gerhard
>
>
> On 08/30/2013 05:46 AM, Nicole McKee - NOAA Affiliate wrote:
>
> I am also having problems just running RT.sh_IN straight out
> of the
> trunk on Zeus.
>
> Nicole
>
>
>
> Nicole McKee
> IMSG/NCEP-EMC Global Modeling Branch
> 301-683-3812
>
>
> On Fri, Aug 30, 2013 at 8:32 AM, Shrinivas Moorthi
> <shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>
> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>>> wrote:
>
> All,
> I am trying to compile NEMS on zeus and I am getting
> errors (I
> guess
> for ESMF library)
>
> "ifort -lmpi -openmp -convert big_endian -assume byterecl
> -mkl=sequential "-g -check all -ftrapuv -stack-check
> -fstack-protector
> -heap-arrays -recursive"
> -I/contrib/nceplibs/nwprod/lib/incmod/nemsio
> -fp-model strict -c module_ERR_MSG.f90
> ifort: command line warning #10156: ignoring option '-g';
> no argument
> required
> module_ERR_MSG.f90(61): error #7002: Error in opening the
> compiled
> module file. Check INCLUDE paths. [ESMF_MOD]"
>
> What am I missing?
> Thanks
> Moorthi
> On 08/23/2013 12:55 PM, Gerhard Theurich wrote:
> > Hi Nicole,
> >
> > Yes, the change was made consistently across _all_
> build targets. You
> > can see them all by just typing "make" (without
> specifying a target).
> > This will print out the help message that shows the
> available
> targets.
> >
> > -Gerhard
> >
> > On 08/23/2013 09:48 AM, Nicole McKee - NOAA Affiliate
> wrote:
> >> Would the 'gsm' part also be used for other
> compilations, as
> well? Like
> >> 'gmake nmm_gsm', for example?
> >>
> >>
> >>
> >> Nicole McKee
> >> IMSG/NCEP-EMC Global Modeling Branch
> >> 301-683-3812
> >>
> >>
> >> On Wed, Aug 14, 2013 at 9:53 AM, Gerhard Theurich
> >> <theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>
> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>>
> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>
> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>>>> wrote:
> >>
> >> That is correct, in my last commit I was trying
> to more
> consistently
> >> move to using "gsm" instead of "gfs". One thing
> was to
> replace "gfs"
> >> with "gsm" in all of the NEMS build targets.
> Another was
> that the old
> >> "gfs" sub-directory was removed.
> >> -Gerhard
> >>
> >> On 08/14/2013 06:29 AM, Sarah Lu - NOAA Affiliate
> wrote:
> >> >
> >> > Gerhard changed it to 'gmake gsm'.
> >> >
> >> >
> >> > On Wed, Aug 14, 2013 at 9:22 AM, Shrinivas
> Moorthi -
> NOAA Federal
> >> > <shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>
> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>>
> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>
> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>>>
> >> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>
> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>>
> >> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>
> <mailto:shrinivas.moorthi at noaa.gov
> <mailto:shrinivas.moorthi at noaa.gov>>>>> wrote:
> >> >
> >> > I haven't touched NEMS for a while and now
> I try to
> compile
> >> ans it
> >> > does not work.
> >> > I get
> >> > "gmake gfs GOCART_MODE=full
> >> > gmake: *** No rule to make target `gfs'.
> Stop."
> >> >
> >> > What am I doing wrong?
> >> > Thanks
> >> > Moorthi
> >> >
> >> >
> >> >
> >> > On Fri, Aug 9, 2013 at 7:17 PM, Sarah Lu -
> NOAA
> Affiliate
> >> > <sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>
> >> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>>> wrote:
> >> >
> >> >
> >> > Thanks to Gerhard, the NEMS trunk has
> been
> pointed to GSM at
> >> > R30692. The two trunk are in sync.
> >> >
> >> > Have a nice weekend to you all,
> >> > Sarah
> >> >
> >> >
> >> > On Fri, Aug 9, 2013 at 6:30 PM, Sarah
> Lu - NOAA
> Affiliate
> >> > <sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>
> >> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>>> wrote:
> >> >
> >> > Dear all --
> >> >
> >> > Both GSM and NEMS trunks have been
> updated
> (R30692
> >> for GSM
> >> > and R30711 for NEMS).
> >> >
> >> > However, I notice the NEMS's
> external link
> is pointed
> >> to GSM
> >> > trunk at R30596. Could someone
> please help
> me to
> >> sync the
> >> > code so the NEMS trunk can point
> to the tip
> of GSM trunk.
> >> >
> >> > Thanks,
> >> > Sarah
> >> >
> >> >
> >> > On Fri, Aug 9, 2013 at 1:13 PM,
> Sarah Lu -
> NOAA Affiliate
> >> > <sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>
> >> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>>> wrote:
> >> >
> >> > Dear All --
> >> >
> >> > Kate will update GSM trunk this
> afternoon, and
> >> I'll then
> >> > update the NEMS trunk. The code
> changes are to
> >> restore
> >> > post quilting regression tests
> at Zeus
> and WCOSS. No
> >> > impact for standard regression
> test package.
> >> >
> >> > A list of code changes are:
> >> > M src/atmos/post/post_nmm.f
> >> > M src/atmos/post/post_gfs.f
> >> > M
> src/conf/configure.nems.Zeus.intel
> >> > M job/exngac_fcst.sh.sms
> >> > M job/regression_tests/RT.sh_IN
> >> > M
> job/regression_tests/JNGAC_FORECAST.sms.para
> >> > M
> job/regression_tests/nmm_conf/nmm_reg_run.IN
> >> > M
> job/regression_tests/rt_gocart.sh
> >> > M
> job/regression_tests/Compile_wcoss.log
> >> > M
> job/regression_tests/ngac_bsub.IN
> >> > M job/regression_tests/rt_gfs.sh
> >> > M
> >> job/regression_tests/RegressionTests_wcoss.log
> >> > M
> job/regression_tests/gfs_fcst_run.IN_Linux
> >> > M
> job/regression_tests/ngac_qsub.IN
> >> > M
> job/regression_tests/gfs_fcst_run.IN_IBM
> >> > M job/exglobal_fcst.sh.sms_nems
> >> >
> >> > Please let me know if you have any
> questions or need
> >> > additional info.
> >> >
> >> > Thanks,
> >> > Sarah
> >> >
> >> >
> >> > On Wed, Aug 7, 2013 at 2:04
> PM, Sarah Lu
> - NOAA
> >> > Affiliate <sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>
> >> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>>>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>
> >> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
> <mailto:sarah.lu at noaa.gov>>>>>
>
> >> > wrote:
> >> >
> >> >
> >> > After Gerhard's commit,
> I'll commit code
> >> changes to
> >> > restore post_quilting
> regression
> tests in NEMS.
> >> > (NEMS ticket #46 and GSM
> ticket #23)
> >> >
> >> > My proposed code changes
> can be
> found at:
> >> >
> >>
> https://svnemc.ncep.noaa.gov/projects/nems/branches/sarah/trunk_quilting
> >> >
> https://svnemc.ncep.noaa.gov/projects/gsm/branches/ticket_23
> >> >
> >> > The working copy at Zeus
> and Tide:
> >> >
> >>
>
> /scratch2/portfolios/NCEPDEV/global/save/Sarah.Lu/NEMS/trunk_quilting
> >> >
> /global/save/Sarah.Lu/NEMS/trunk_quilting
> >> >
> >> >
> >> > On Wed, Aug 7, 2013 at
> 12:23 PM,
> Gerhard Theurich
> >> > <theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>
> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>>
> >> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>
> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>>>
> >> > <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>
> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>>
> >> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>
> <mailto:theurich at sourcespring.net
> <mailto:theurich at sourcespring.net>>>>> wrote:
> >> >
> >> > Hi,
> >> >
> >> > This is a follow-up
> commit to
> the previous
> >> > commit I made to the NEMS
> >> > trunk on 08/02/13.
> >> >
> >> > (1) Now that the
> associated
> "gsm" changes are
> >> > merged onto the GSM trunk
> >> > (thank you Kate!), I would like
> to point the
> >> > "src/atmos/gsm" subdir to
> >> > the current revision
> of the GSM
> trunk.
> >> >
> >> > (2) A few house
> cleaning items:
> >> > - Remove deprecated
> subdirs
> >> "src/atmos/gfs" and
> >> > "src/ocean".
> >> > - Change use of "gfs"
> in favor
> of "gsm"
> >> in build
> >> > targets and ATM core
> >> > specification.
> >> >
> >> > (3) Add the file
> "nems.configure.IN <http://nems.configure.IN>
> <http://nems.configure.IN>
> >> <http://nems.configure.IN>
> >> >
> <http://nems.configure.IN>" that
> I had
> >> forgotten
> >> > to add in my
> >> > previous commit. This causes
> currently a
> >> warning
> >> > in the regular
> >> > regression testing (but no
> errors or bail
> >> outs).
> >> > However, the "nuopc
> >> > test" option does
> depend on this
> file.
> >> >
> >> > Code changes and test
> results are
> >> available on
> >> > Zeus under:
> >> >
> >> /home/Gerhard.Theurich/NEMS.trunk30446-working
> >> >
> >> > The modifications in
> detail:
> >> >
> >> > _M src/atmos
> >> > -> set svn:externals
> property to "gsm
> >> > -r30596
> >> > https://svnemc.ncep.noaa.gov/projects/gsm/trunk"
> >> > D src/atmos/gfs
> >> > -> remove deprecated
> "gfs" directory
> >> > M
> src/atmos/module_ATM_GRID_COMP.F90
> >> > -> support "gfs" and
> "gsm" as
> >> settings
> >> > for the ATM core/model
> >> > D src/ocean
> >> > -> remove deprecated "ocean"
> >> directory
> >> > M src/makefile
> >> > -> replace "gfs" with
> "gsm" in
> >> all build
> >> > targets
> >> > M
> job/regression_tests/RT.sh_IN
> >> > -> adjust to the build
> targets change
> >> > A
> >> job/regression_tests/nems.configure.IN
> <http://nems.configure.IN>
> <http://nems.configure.IN> <http://nems.configure.IN>
> >> > <http://nems.configure.IN>
> >> > -> added template file
> that is needed
> >> > for NUOPC mode and was
> >> > forgotten before
> >> > M
> >> job/regression_tests/RegressionTests_zeus.log
> >> > -> updated output file
> >> > M
> job/regression_tests/Compile_zeus.log
> >> > -> updated output file
> >> >
> >> > -Gerhard
> >> >
> >> _______________________________________________
> >> > Ncep.list.nems.announce mailing list
> >> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
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> >>
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> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>>
> >> >
> >>
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
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> >>
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> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>>>
> >> >
> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
> >> >
> >> >
> >> >
> >> >
> >> >
> >> >
> >> > _______________________________________________
> >> > Ncep.list.nems.announce mailing list
> >> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
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> >>
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> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>>
> >> >
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>
> >>
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
> <mailto:Ncep.list.nems.announce at lstsrv.ncep.noaa.gov>>>>
> >> >
> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
> >> >
> >> >
> >> >
> >> >
> >> > --
> >> > Dr. Shrinivas Moorthi
> >> > Research Meteorologist
> >> > Global Climate and Weather Modeling Branch
> >> > Environmental Modeling Center / National
> Centers for
> >> Environmental
> >> > Prediction
> >> > 5830 University Research Court - (W/NP23),
> College
> Park MD
> >> 20740 USA
> >> > Tel: (301)683-3718 <tel:%28301%29683-3718>
> >> >
> >> > e-mail: Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>
> <mailto:Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>>
> >> <mailto:Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>
> <mailto:Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>>>
> >> <mailto:Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>
> <mailto:Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>>
> <mailto:Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>
> <mailto:Shrinivas.Moorthi at noaa.gov
> <mailto:Shrinivas.Moorthi at noaa.gov>>>>
> >> > Phone: (301) 683-3718
> <tel:%28301%29%20683-3718>
> Fax: (301)
> >> > 683-3718 <tel:%28301%29%20683-3718>
> >> >
> >> >
> >> >
> >> >
> >> > _______________________________________________
> >> > Ncep.list.nems.announce mailing list
> >> > Ncep.list.nems.announce at lstsrv.ncep.noaa.gov
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> >>
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> >> >
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> >> >
> >> _______________________________________________
> >> Ncep.list.nems.announce mailing list
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> >>
> >>
> > _______________________________________________
> > Ncep.list.nems.announce mailing list
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> >
> https://lstsrv.ncep.noaa.gov/mailman/listinfo/ncep.list.nems.announce
>
>
> --
> Dr. Shrinivas Moorthi
> Research Meteorologist
> Global Climate and Weather Modeling Branch
> Environmental Modeling Center / National Centers for
> Environmental
> Prediction
> 5830 University Research Court - (W/NP23), College Park MD
> 20740 USA
> Tel:(301)683-3718
>
> _______________________________________________
> Ncep.list.nems.announce mailing list
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--
Ratko Vasic
Meteorologist
301-683-3814
National Oceanic and Atmospheric Administration
NCEP/EMC, Room 2791
NCWCP W/NP2
5830 University Research Court
College Park, MD 20740-3818
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