[Ncep.list.nems.announce] Follow-up commit to NEMS trunk for ticket #41 NUOPC/OCN integration
Nicole McKee - NOAA Affiliate
nicole.mckee at noaa.gov
Fri Aug 30 14:22:24 UTC 2013
Gerhard,
When trying to just submit RT.sh_IN, it would tell me model code was
compiling, but then quickly just die. I tried compiling outside of the
script, which was successful, and am now trying to run RT.sh_IN with my
current compilation. But, shouldn't it all work properly by just running
RT.sh_IN?
Nicole
Nicole McKee
IMSG/NCEP-EMC Global Modeling Branch
301-683-3812
On Fri, Aug 30, 2013 at 10:08 AM, Gerhard Theurich <
theurich at sourcespring.net> wrote:
> Hi Nicole,
>
> What issues are you seeing? There was a problem with the MOAB scheduler
> this morning on Zeus. Were your issues related to building NEMS out of
> RT.sh, or getting jobs running? I think the MOAB issues are settled now.
>
> -Gerhard
>
>
> On 08/30/2013 05:46 AM, Nicole McKee - NOAA Affiliate wrote:
>
>> I am also having problems just running RT.sh_IN straight out of the
>> trunk on Zeus.
>>
>> Nicole
>>
>>
>>
>> Nicole McKee
>> IMSG/NCEP-EMC Global Modeling Branch
>> 301-683-3812
>>
>>
>> On Fri, Aug 30, 2013 at 8:32 AM, Shrinivas Moorthi
>> <shrinivas.moorthi at noaa.gov <mailto:shrinivas.moorthi@**noaa.gov<shrinivas.moorthi at noaa.gov>>>
>> wrote:
>>
>> All,
>> I am trying to compile NEMS on zeus and I am getting errors (I
>> guess
>> for ESMF library)
>>
>> "ifort -lmpi -openmp -convert big_endian -assume byterecl
>> -mkl=sequential "-g -check all -ftrapuv -stack-check -fstack-protector
>> -heap-arrays -recursive" -I/contrib/nceplibs/nwprod/**
>> lib/incmod/nemsio
>> -fp-model strict -c module_ERR_MSG.f90
>> ifort: command line warning #10156: ignoring option '-g'; no argument
>> required
>> module_ERR_MSG.f90(61): error #7002: Error in opening the compiled
>> module file. Check INCLUDE paths. [ESMF_MOD]"
>>
>> What am I missing?
>> Thanks
>> Moorthi
>> On 08/23/2013 12:55 PM, Gerhard Theurich wrote:
>> > Hi Nicole,
>> >
>> > Yes, the change was made consistently across _all_ build targets.
>> You
>> > can see them all by just typing "make" (without specifying a
>> target).
>> > This will print out the help message that shows the available
>> targets.
>> >
>> > -Gerhard
>> >
>> > On 08/23/2013 09:48 AM, Nicole McKee - NOAA Affiliate wrote:
>> >> Would the 'gsm' part also be used for other compilations, as
>> well? Like
>> >> 'gmake nmm_gsm', for example?
>> >>
>> >>
>> >>
>> >> Nicole McKee
>> >> IMSG/NCEP-EMC Global Modeling Branch
>> >> 301-683-3812
>> >>
>> >>
>> >> On Wed, Aug 14, 2013 at 9:53 AM, Gerhard Theurich
>> >> <theurich at sourcespring.net <mailto:theurich at sourcespring.**net<theurich at sourcespring.net>
>> >
>> <mailto:theurich at sourcespring.**net <theurich at sourcespring.net>
>> <mailto:theurich at sourcespring.**net <theurich at sourcespring.net>>>>
>> wrote:
>> >>
>> >> That is correct, in my last commit I was trying to more
>> consistently
>> >> move to using "gsm" instead of "gfs". One thing was to
>> replace "gfs"
>> >> with "gsm" in all of the NEMS build targets. Another was
>> that the old
>> >> "gfs" sub-directory was removed.
>> >> -Gerhard
>> >>
>> >> On 08/14/2013 06:29 AM, Sarah Lu - NOAA Affiliate wrote:
>> >> >
>> >> > Gerhard changed it to 'gmake gsm'.
>> >> >
>> >> >
>> >> > On Wed, Aug 14, 2013 at 9:22 AM, Shrinivas Moorthi -
>> NOAA Federal
>> >> > <shrinivas.moorthi at noaa.gov
>> <mailto:shrinivas.moorthi@**noaa.gov <shrinivas.moorthi at noaa.gov>>
>> <mailto:shrinivas.moorthi@**noaa.gov <shrinivas.moorthi at noaa.gov><mailto:
>> shrinivas.moorthi@**noaa.gov <shrinivas.moorthi at noaa.gov>>>
>> >> <mailto:shrinivas.moorthi@**noaa.gov<shrinivas.moorthi at noaa.gov>
>> <mailto:shrinivas.moorthi@**noaa.gov <shrinivas.moorthi at noaa.gov>>
>> >> <mailto:shrinivas.moorthi@**noaa.gov<shrinivas.moorthi at noaa.gov>
>> <mailto:shrinivas.moorthi@**noaa.gov <shrinivas.moorthi at noaa.gov>>>>>
>> wrote:
>> >> >
>> >> > I haven't touched NEMS for a while and now I try to
>> compile
>> >> ans it
>> >> > does not work.
>> >> > I get
>> >> > "gmake gfs GOCART_MODE=full
>> >> > gmake: *** No rule to make target `gfs'. Stop."
>> >> >
>> >> > What am I doing wrong?
>> >> > Thanks
>> >> > Moorthi
>> >> >
>> >> >
>> >> >
>> >> > On Fri, Aug 9, 2013 at 7:17 PM, Sarah Lu - NOAA
>> Affiliate
>> >> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>
>> >> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>> wrote:
>> >> >
>> >> >
>> >> > Thanks to Gerhard, the NEMS trunk has been
>> pointed to GSM at
>> >> > R30692. The two trunk are in sync.
>> >> >
>> >> > Have a nice weekend to you all,
>> >> > Sarah
>> >> >
>> >> >
>> >> > On Fri, Aug 9, 2013 at 6:30 PM, Sarah Lu - NOAA
>> Affiliate
>> >> > <sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>
>> >> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>> wrote:
>> >> >
>> >> > Dear all --
>> >> >
>> >> > Both GSM and NEMS trunks have been updated
>> (R30692
>> >> for GSM
>> >> > and R30711 for NEMS).
>> >> >
>> >> > However, I notice the NEMS's external link
>> is pointed
>> >> to GSM
>> >> > trunk at R30596. Could someone please help
>> me to
>> >> sync the
>> >> > code so the NEMS trunk can point to the tip
>> of GSM trunk.
>> >> >
>> >> > Thanks,
>> >> > Sarah
>> >> >
>> >> >
>> >> > On Fri, Aug 9, 2013 at 1:13 PM, Sarah Lu -
>> NOAA Affiliate
>> >> > <sarah.lu at noaa.gov
>> <mailto:sarah.lu at noaa.gov> <mailto:sarah.lu at noaa.gov
>> <mailto:sarah.lu at noaa.gov>>
>> >> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>> wrote:
>> >> >
>> >> > Dear All --
>> >> >
>> >> > Kate will update GSM trunk this
>> afternoon, and
>> >> I'll then
>> >> > update the NEMS trunk. The code
>> changes are to
>> >> restore
>> >> > post quilting regression tests at Zeus
>> and WCOSS. No
>> >> > impact for standard regression test
>> package.
>> >> >
>> >> > A list of code changes are:
>> >> > M src/atmos/post/post_nmm.f
>> >> > M src/atmos/post/post_gfs.f
>> >> > M src/conf/configure.nems.Zeus.**
>> intel
>> >> > M job/exngac_fcst.sh.sms
>> >> > M job/regression_tests/RT.sh_IN
>> >> > M
>> job/regression_tests/JNGAC_**FORECAST.sms.para
>> >> > M
>> job/regression_tests/nmm_conf/**nmm_reg_run.IN
>> >> > M job/regression_tests/rt_**
>> gocart.sh
>> >> > M
>> job/regression_tests/Compile_**wcoss.log
>> >> > M job/regression_tests/ngac_**
>> bsub.IN
>> >> > M job/regression_tests/rt_gfs.sh
>> >> > M
>> >> job/regression_tests/**RegressionTests_wcoss.log
>> >> > M
>> job/regression_tests/gfs_fcst_**run.IN_Linux
>> >> > M job/regression_tests/ngac_**
>> qsub.IN
>> >> > M
>> job/regression_tests/gfs_fcst_**run.IN_IBM
>> >> > M job/exglobal_fcst.sh.sms_nems
>> >> >
>> >> > Please let me know if you have any
>> questions or need
>> >> > additional info.
>> >> >
>> >> > Thanks,
>> >> > Sarah
>> >> >
>> >> >
>> >> > On Wed, Aug 7, 2013 at 2:04 PM, Sarah Lu
>> - NOAA
>> >> > Affiliate <sarah.lu at noaa.gov
>> <mailto:sarah.lu at noaa.gov>
>> >> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>
>> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>
>> >> <mailto:sarah.lu at noaa.gov <mailto:sarah.lu at noaa.gov>>>>
>>
>> >> > wrote:
>> >> >
>> >> >
>> >> > After Gerhard's commit, I'll commit
>> code
>> >> changes to
>> >> > restore post_quilting regression
>> tests in NEMS.
>> >> > (NEMS ticket #46 and GSM ticket #23)
>> >> >
>> >> > My proposed code changes can be
>> found at:
>> >> >
>> >>
>> https://svnemc.ncep.noaa.gov/**projects/nems/branches/sarah/**
>> trunk_quilting<https://svnemc.ncep.noaa.gov/projects/nems/branches/sarah/trunk_quilting>
>> >> > https://svnemc.ncep.noaa.gov/**
>> projects/gsm/branches/ticket_**23<https://svnemc.ncep.noaa.gov/projects/gsm/branches/ticket_23>
>> >> >
>> >> > The working copy at Zeus and Tide:
>> >> >
>> >>
>> /scratch2/portfolios/NCEPDEV/**global/save/Sarah.Lu/NEMS/**
>> trunk_quilting
>> >> >
>> /global/save/Sarah.Lu/NEMS/**trunk_quilting
>> >> >
>> >> >
>> >> > On Wed, Aug 7, 2013 at 12:23 PM,
>> Gerhard Theurich
>> >> > <theurich at sourcespring.net
>> <mailto:theurich at sourcespring.**net <theurich at sourcespring.net>>
>> >> <mailto:theurich at sourcespring.**net<theurich at sourcespring.net>
>> <mailto:theurich at sourcespring.**net <theurich at sourcespring.net>>>
>> >> > <mailto:theurich at sourcespring.**net<theurich at sourcespring.net>
>> <mailto:theurich at sourcespring.**net <theurich at sourcespring.net>>
>> >> <mailto:theurich at sourcespring.**net<theurich at sourcespring.net>
>> <mailto:theurich at sourcespring.**net <theurich at sourcespring.net>>>>>
>> wrote:
>> >> >
>> >> > Hi,
>> >> >
>> >> > This is a follow-up commit to
>> the previous
>> >> > commit I made to the NEMS
>> >> > trunk on 08/02/13.
>> >> >
>> >> > (1) Now that the associated
>> "gsm" changes are
>> >> > merged onto the GSM trunk
>> >> > (thank you Kate!), I would like
>> to point the
>> >> > "src/atmos/gsm" subdir to
>> >> > the current revision of the GSM
>> trunk.
>> >> >
>> >> > (2) A few house cleaning items:
>> >> > - Remove deprecated subdirs
>> >> "src/atmos/gfs" and
>> >> > "src/ocean".
>> >> > - Change use of "gfs" in favor
>> of "gsm"
>> >> in build
>> >> > targets and ATM core
>> >> > specification.
>> >> >
>> >> > (3) Add the file
>> "nems.configure.IN <http://nems.configure.IN>
>> >> <http://nems.configure.IN>
>> >> > <http://nems.configure.IN>" that
>> I had
>> >> forgotten
>> >> > to add in my
>> >> > previous commit. This causes
>> currently a
>> >> warning
>> >> > in the regular
>> >> > regression testing (but no
>> errors or bail
>> >> outs).
>> >> > However, the "nuopc
>> >> > test" option does depend on this
>> file.
>> >> >
>> >> > Code changes and test results are
>> >> available on
>> >> > Zeus under:
>> >> >
>> >> /home/Gerhard.Theurich/NEMS.**trunk30446-working
>> >> >
>> >> > The modifications in detail:
>> >> >
>> >> > _M src/atmos
>> >> > -> set svn:externals
>> property to "gsm
>> >> > -r30596
>> >> > https://svnemc.ncep.noaa.gov/**projects/gsm/trunk<https://svnemc.ncep.noaa.gov/projects/gsm/trunk>
>> "
>> >> > D src/atmos/gfs
>> >> > -> remove deprecated
>> "gfs" directory
>> >> > M
>> src/atmos/module_ATM_GRID_**COMP.F90
>> >> > -> support "gfs" and
>> "gsm" as
>> >> settings
>> >> > for the ATM core/model
>> >> > D src/ocean
>> >> > -> remove deprecated
>> "ocean"
>> >> directory
>> >> > M src/makefile
>> >> > -> replace "gfs" with
>> "gsm" in
>> >> all build
>> >> > targets
>> >> > M job/regression_tests/RT.sh_IN
>> >> > -> adjust to the build
>> targets change
>> >> > A
>> >> job/regression_tests/nems.**configure.IN<http://nems.configure.IN>
>> <http://nems.configure.IN> <http://nems.configure.IN>
>> >> > <http://nems.configure.IN>
>> >> > -> added template file
>> that is needed
>> >> > for NUOPC mode and was
>> >> > forgotten before
>> >> > M
>> >> job/regression_tests/**RegressionTests_zeus.log
>> >> > -> updated output file
>> >> > M
>> job/regression_tests/Compile_**zeus.log
>> >> > -> updated output file
>> >> >
>> >> > -Gerhard
>> >> >
>> >> ______________________________**_________________
>> >> > Ncep.list.nems.announce mailing
>> list
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>> >> >
>> >> >
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > ______________________________**_________________
>> >> > Ncep.list.nems.announce mailing list
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>> >> >
>> >> >
>> >> >
>> >> >
>> >> > --
>> >> > Dr. Shrinivas Moorthi
>> >> > Research Meteorologist
>> >> > Global Climate and Weather Modeling Branch
>> >> > Environmental Modeling Center / National Centers for
>> >> Environmental
>> >> > Prediction
>> >> > 5830 University Research Court - (W/NP23), College
>> Park MD
>> >> 20740 USA
>> >> > Tel: (301)683-3718 <tel:%28301%29683-3718>
>> >> >
>> >> > e-mail: Shrinivas.Moorthi at noaa.gov
>> <mailto:Shrinivas.Moorthi@**noaa.gov <Shrinivas.Moorthi at noaa.gov>>
>> >> <mailto:Shrinivas.Moorthi@**noaa.gov<Shrinivas.Moorthi at noaa.gov>
>> <mailto:Shrinivas.Moorthi@**noaa.gov <Shrinivas.Moorthi at noaa.gov>>>
>> >> <mailto:Shrinivas.Moorthi@**noaa.gov<Shrinivas.Moorthi at noaa.gov>
>> <mailto:Shrinivas.Moorthi@**noaa.gov <Shrinivas.Moorthi at noaa.gov>>
>> <mailto:Shrinivas.Moorthi@**noaa.gov <Shrinivas.Moorthi at noaa.gov><mailto:
>> Shrinivas.Moorthi@**noaa.gov <Shrinivas.Moorthi at noaa.gov>>>>
>> >> > Phone: (301) 683-3718 <tel:%28301%29%20683-3718>
>> Fax: (301)
>> >> > 683-3718 <tel:%28301%29%20683-3718>
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > ______________________________**_________________
>> >> > Ncep.list.nems.announce mailing list
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>>
>> --
>> Dr. Shrinivas Moorthi
>> Research Meteorologist
>> Global Climate and Weather Modeling Branch
>> Environmental Modeling Center / National Centers for Environmental
>> Prediction
>> 5830 University Research Court - (W/NP23), College Park MD 20740 USA
>> Tel:(301)683-3718
>>
>> ______________________________**_________________
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