[Ncep.list.emc.fv3gfs_tickets] FV3GFS Ticket #15: FV3 May 15 Release

Tue May 9 16:56:54 UTC 2017

Moorthi,

I just got this error yesterday. Please see the job submit line, you should
have "aprun... executable", without aprun (cray) you will get that error.

Jun

On Tue, May 9, 2017 at 12:54 PM, Shrinivas Moorthi <
shrinivas.moorthi at noaa.gov> wrote:

> Does anyone know what might cause the following error right off the bat?
> "FATAL from PE    92: mpp_sync_self: size_recv does not match of data
> received
>
> Rank 145 [Tue May  9 16:38:33 2017] [c7-0c2s6n0] Fatal error in PMPI_Wait:
> Message truncated, error stack:
> PMPI_Wait(186)...................: MPI_Wait(request=0xbf3e7c4,
> status=0xb30ac68) failed
> MPIR_Wait_impl(79)...............:
> MPID_nem_gni_lmt_start_recv(1580): Message from rank 89 and tag 2
> truncated; 33528 bytes received but buffer size is 5880"
> Thanks
> Moorthi
>
> On 05/09/2017 11:48 AM, Dusan Jovic wrote:
>
> Jun,
>
> Here's what I get when I try to checkout that branch:
>
> slogin2:/gpfs/hps/emc/meso/save/Dusan.Jovic/FV3> *svn co
> https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release
> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release>*
>
> A    fv3.v0release/parm
> A    fv3.v0release/parm/model_configure.IN
>
> . . . .
>
> A    fv3.v0release/compsets/fv3.input
> A    fv3.v0release/standaloneFV3.appBuilder
>  U   fv3.v0release
>
> Fetching external item into '*fv3.v0release/NEMS*':
> A    fv3.v0release/NEMS/exe
> A    fv3.v0release/NEMS/exe/mkDepends.pl
>
>  . . . .
>
> A    fv3.v0release/NEMS/NEMSAppBuilder
> A    fv3.v0release/NEMS/OldCompsetRun
>  U   fv3.v0release/NEMS
>
> Fetching external item into '*fv3.v0release/NEMS/tests/produti*l':
> A    fv3.v0release/NEMS/tests/produtil/ush
> A    fv3.v0release/NEMS/tests/produtil/ush/testgen.py
> . . . .
>
> A    fv3.v0release/NEMS/tests/produtil/ush/forcetest.py
> A    fv3.v0release/NEMS/tests/produtil/ush/testme.py
> Checked out external at revision 90581.
>
> Checked out revision 90943.
> svn: warning: W200000: Error handling externals definition for '
> *fv3.v0release/FV3*':
> svn: warning: W175013: Unable to connect to a repository at URL '*https://svnemc.ncep.noaa.gov/projects/fv3/trunk
> <https://svnemc.ncep.noaa.gov/projects/fv3/trunk>*'
> Checked out revision 92536.
>
> Again, is this somehow related to last week's problems with the svn server?
>
> Dusan
>
> On 05/09/2017 11:22 AM, Jun Wang - NOAA Affiliate wrote:
>
> Dusan,
>
> Thanks for looking at the release readme file! The readme file is prepared
> for the targeted release, which is a  final nemsfv3gfs tag, currently it
> does not exist yet. Please check out the current branch instead:
>
>
>
> *https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release
> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release/release/v0/readme.txt>
> *
> then following the readme file to see if you can run the code on theia and
> wcoss, please let me know if you find any mistakes/errors. Thank you very
> much for the first person for beta testing!
>
>
> Jun
>
> On Tue, May 9, 2017 at 11:10 AM, Dusan Jovic <dusan.jovic at noaa.gov> wrote:
>
>> Is this readme.txt file the latest version available?
>>
>> *https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release/release/v0/readme.txt
>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release/release/v0/readme.txt>*
>>
>> If it is then the URL of the v0 repository is either wrong or I am not
>> allowed to check it out (is this related to recent issues with our svn
>> server?)
>>
>> 1.  check out release version at:
>>       https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0,
>>
>>     %svn co https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0
>>     %cd fv3_release.v0
>>
>>
>> svn co https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0
>> svn: E170000: URL 'https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0' doesn't exist
>>
>>
>> Dusan
>> On 05/03/2017 03:45 PM, FV3GFS Trac Ticket wrote:
>>
>> #15: FV3 May 15 Release
>> ------------------------------+------------------------
>>   Reporter:  samuel.trahan@…  |      Owner:  somebody
>>       Type:  task             |     Status:  new
>>   Priority:  critical         |  Milestone:  milestone1
>>  Component:  component1       |    Version:
>> Resolution:                   |   Keywords:  release
>> ------------------------------+------------------------
>>
>> Comment (by jun.wang@…):
>>
>>  Following Vijay's suggestion, a nemsfv3 branch is created at:
>>
>>  *https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release>*
>>
>>  This branch will contain required script and instruction to run the test
>>  cases Fanglin set up.
>>
>>  A new directory release/v0 is added under fv3.v0release, following files
>>  are copied from Fanglin's fv3gfs branch: FV3GFS_V0_RELEASE:
>>
>>  exec  exp  modulefiles  parm  readme.txt  scripts  sorc  ush
>>
>>  where:
>>  exec: hold fregrid executables
>>  exp: contains build.sh and runjob_cray.sh, runjob_theia.sh, run script to
>>  start the experiment
>>  modulefiles : contain fregrid model files
>>  readme.txt: instructions on running release cases
>>  scripts: exglobal_fcst_nemsfv3gfs.sh forecast scripts to set up
>>  namelist,etc.
>>  sorc: contain fregrid source code
>>  ush: utility script to run remapping
>>
>>  A new script runjob_theia.sh is created and run the test cases on theia.
>>
>> --
>> Ticket URL: <https://svnemc.ncep.noaa.gov/trac/fv3gfs/ticket/15#comment:2> <https://svnemc.ncep.noaa.gov/trac/fv3gfs/ticket/15#comment:2>
>> fv3gfs <https://svnemc.ncep.noaa.gov/trac/fv3gfs> <https://svnemc.ncep.noaa.gov/trac/fv3gfs>
>> NGGPS FV3GFS Development
>>
>> --
> Dr. Shrinivas Moorthi
> Research Meteorologist
> Global Climate and Weather Modeling Branch
> Environmental Modeling Center / National Centers for Environmental Prediction
> 5830 University Research Court - (W/NP23), College Park MD 20740 USA
> Tel:(301)683-3718 <(301)%20683-3718>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: https://www.lstsrv.ncep.noaa.gov/pipermail/ncep.list.emc.fv3gfs_tickets/attachments/20170509/21744086/attachment-0001.html 