[Ncep.list.emc.fv3gfs_tickets] FV3GFS Ticket #15: FV3 May 15 Release
Shrinivas Moorthi
shrinivas.moorthi at noaa.gov
Tue May 9 18:16:31 UTC 2017
Not true Jun, my successful runs have the same "aprun".
This is something GFDL folks can hopefully answer why this can happen.
Thanks
Moorhti
On 05/09/2017 12:56 PM, Jun Wang - NOAA Affiliate wrote:
> Moorthi,
>
> I just got this error yesterday. Please see the job submit line, you
> should have "aprun... executable", without aprun (cray) you will get
> that error.
>
> Jun
>
> On Tue, May 9, 2017 at 12:54 PM, Shrinivas Moorthi
> <shrinivas.moorthi at noaa.gov <mailto:shrinivas.moorthi at noaa.gov>> wrote:
>
> Does anyone know what might cause the following error right off
> the bat?
> "FATAL from PE 92: mpp_sync_self: size_recv does not match of
> data received
>
> Rank 145 [Tue May 9 16:38:33 2017] [c7-0c2s6n0] Fatal error in
> PMPI_Wait: Message truncated, error stack:
> PMPI_Wait(186)...................: MPI_Wait(request=0xbf3e7c4,
> status=0xb30ac68) failed
> MPIR_Wait_impl(79)...............:
> MPID_nem_gni_lmt_start_recv(1580): Message from rank 89 and tag 2
> truncated; 33528 bytes received but buffer size is 5880"
> Thanks
> Moorthi
>
> On 05/09/2017 11:48 AM, Dusan Jovic wrote:
>> Jun,
>>
>> Here's what I get when I try to checkout that branch:
>>
>> slogin2:/gpfs/hps/emc/meso/save/Dusan.Jovic/FV3> *svn co
>> https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release
>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release>*
>>
>> A fv3.v0release/parm
>> A fv3.v0release/parm/model_configure.IN
>>
>> . . . .
>>
>> A fv3.v0release/compsets/fv3.input
>> A fv3.v0release/standaloneFV3.appBuilder
>> U fv3.v0release
>>
>> Fetching external item into '*fv3.v0release/NEMS*':
>> A fv3.v0release/NEMS/exe
>> A fv3.v0release/NEMS/exe/mkDepends.pl
>>
>> . . . .
>>
>> A fv3.v0release/NEMS/NEMSAppBuilder
>> A fv3.v0release/NEMS/OldCompsetRun
>> U fv3.v0release/NEMS
>>
>> Fetching external item into '*fv3.v0release/NEMS/tests/produti*l':
>> A fv3.v0release/NEMS/tests/produtil/ush
>> A fv3.v0release/NEMS/tests/produtil/ush/testgen.py
>> . . . .
>>
>> A fv3.v0release/NEMS/tests/produtil/ush/forcetest.py
>> A fv3.v0release/NEMS/tests/produtil/ush/testme.py
>> Checked out external at revision 90581.
>>
>> Checked out revision 90943.
>> svn: warning: W200000: Error handling externals definition for
>> '*fv3.v0release/FV3*':
>> svn: warning: W175013: Unable to connect to a repository at URL
>> '*https://svnemc.ncep.noaa.gov/projects/fv3/trunk
>> <https://svnemc.ncep.noaa.gov/projects/fv3/trunk>*'
>> Checked out revision 92536.
>>
>> Again, is this somehow related to last week's problems with the
>> svn server?
>>
>> Dusan
>>
>>
>> On 05/09/2017 11:22 AM, Jun Wang - NOAA Affiliate wrote:
>>> Dusan,
>>>
>>> Thanks for looking at the release readme file! The readme file
>>> is prepared for the targeted release, which is a final
>>> nemsfv3gfs tag, currently it does not exist yet. Please check
>>> out the current branch instead:
>>>
>>> *https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release
>>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release/release/v0/readme.txt>
>>>
>>> *
>>> then following the readme file to see if you can run the code on
>>> theia and wcoss, please let me know if you find any
>>> mistakes/errors. Thank you very much for the first person for
>>> beta testing!
>>>
>>>
>>> Jun*
>>> *
>>>
>>> On Tue, May 9, 2017 at 11:10 AM, Dusan Jovic
>>> <dusan.jovic at noaa.gov <mailto:dusan.jovic at noaa.gov>> wrote:
>>>
>>> Is this readme.txt file the latest version available?
>>>
>>> *https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release/release/v0/readme.txt
>>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release/release/v0/readme.txt>**
>>> *
>>> If it is then the URL of the v0 repository is either wrong
>>> or I am not allowed to check it out (is this related to
>>> recent issues with our svn server?)
>>>
>>> 1. check out release version at:
>>> https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0
>>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0>,
>>>
>>> %svn cohttps://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0
>>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0>
>>> %cd fv3_release.v0
>>>
>>>
>>> svn cohttps://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0
>>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0>
>>> svn: E170000: URL 'https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0
>>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/tags/fv3_release.v0>' doesn't exist
>>>
>>> Dusan
>>> On 05/03/2017 03:45 PM, FV3GFS Trac Ticket wrote:
>>>> #15: FV3 May 15 Release
>>>> ------------------------------+------------------------
>>>> Reporter: samuel.trahan@… | Owner: somebody
>>>> Type: task | Status: new
>>>> Priority: critical | Milestone: milestone1
>>>> Component: component1 | Version:
>>>> Resolution: | Keywords: release
>>>> ------------------------------+------------------------
>>>>
>>>> Comment (by jun.wang@…):
>>>>
>>>> Following Vijay's suggestion, a nemsfv3 branch is created at:
>>>>
>>>> *https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release
>>>> <https://svnemc.ncep.noaa.gov/projects/nems/apps/NEMSfv3gfs/branches/fv3.v0release>*
>>>>
>>>> This branch will contain required script and instruction to run the test
>>>> cases Fanglin set up.
>>>>
>>>> A new directory release/v0 is added under fv3.v0release, following files
>>>> are copied from Fanglin's fv3gfs branch: FV3GFS_V0_RELEASE:
>>>>
>>>> exec exp modulefiles parm readme.txt scripts sorc ush
>>>>
>>>> where:
>>>> exec: hold fregrid executables
>>>> exp: contains build.sh and runjob_cray.sh, runjob_theia.sh, run script to
>>>> start the experiment
>>>> modulefiles : contain fregrid model files
>>>> readme.txt: instructions on running release cases
>>>> scripts: exglobal_fcst_nemsfv3gfs.sh forecast scripts to set up
>>>> namelist,etc.
>>>> sorc: contain fregrid source code
>>>> ush: utility script to run remapping
>>>>
>>>> A new script runjob_theia.sh is created and run the test cases on theia.
>>>>
>>>> --
>>>> Ticket URL:<https://svnemc.ncep.noaa.gov/trac/fv3gfs/ticket/15#comment:2>
>>>> <https://svnemc.ncep.noaa.gov/trac/fv3gfs/ticket/15#comment:2>
>>>> fv3gfs<https://svnemc.ncep.noaa.gov/trac/fv3gfs>
>>>> <https://svnemc.ncep.noaa.gov/trac/fv3gfs>
>>>> NGGPS FV3GFS Development
>>>
> --
> Dr. Shrinivas Moorthi
> Research Meteorologist
> Global Climate and Weather Modeling Branch
> Environmental Modeling Center / National Centers for Environmental Prediction
> 5830 University Research Court - (W/NP23), College Park MD 20740 USA
> Tel:(301)683-3718 <tel:%28301%29%20683-3718>
>
--
Dr. Shrinivas Moorthi
Research Meteorologist
Global Climate and Weather Modeling Branch
Environmental Modeling Center / National Centers for Environmental Prediction
5830 University Research Court - (W/NP23), College Park MD 20740 USA
Tel:(301)683-3718
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