[Ncep.list.nems.announce] NEMS, NEMSLegacy and nmmb commits

Dusan Jovic dusan.jovic at noaa.gov
Fri Jun 24 13:41:47 UTC 2016


Weiguo,

  Yes, if your changes are only in nmmb or in nmmb physics the only 
thing you have to do is commit to the nmmb repository. If, however, you 
need to change some parts of the gfs physics then you need to work with 
both nems and nmmb repositories.

Dusan


On 06/24/2016 09:19 AM, Weiguo Wang - NOAA Affiliate wrote:
> Hi Dusan,
>
>      It seems that NEMS becomes more and more complicated. I may have 
> a few hurricane phys changes only in NMMB soon.  Is the commit 
> procedure of nmmb  still same as  before ? i.e.,  checkout the most 
> recent nmmb, then use "svn ci " to commit the changes to trunk.
>
>
> Regards,
> Weiguo
>
>
>
> On Fri, Jun 24, 2016 at 8:52 AM, Eugene Mirvis - NOAA Affiliate 
> <eugene.mirvis at noaa.gov <mailto:eugene.mirvis at noaa.gov>> wrote:
>
>     Dusan,
>
>     There are still several directories are having permissions issues,
>     for instance:
>
>
>     Theia:/scratch4/NCEPDEV/meso/save/Dusan.Jovic/nmmb/nems_legacy/NEMS/src/atmos/nmm/conf>ls
>     -la
>     total 496
>     drwxr-sr-x 3 Dusan.Jovic meso  4096 Jun 23 14:03 .
>     drwxr-sr-x 6 Dusan.Jovic meso 32768 Jun 23 14:03 ..
>     -rw------- 1 Dusan.Jovic meso  1495 Jun 16 17:05
>     configure.nmmb.Linux.gnu
>     -rw------- 1 Dusan.Jovic meso  1501 Jun 16 17:05
>     configure.nmmb.Linux.intel
>     -rw------- 1 Dusan.Jovic meso  1266 Jun 16 17:05
>     configure.nmmb.Linux.pgi
>     -rw------- 1 Dusan.Jovic meso  2076 Jun 16 17:05 configure.nmmb.theia
>     -rw------- 1 Dusan.Jovic meso  2036 Jun 16 17:05 configure.nmmb.wcoss
>     -rw------- 1 Dusan.Jovic meso   483 Jun 16 17:05 make.rules
>     -rw------- 1 Dusan.Jovic meso   436 Jun 16 17:05 modules.nmmb.theia
>     -rw------- 1 Dusan.Jovic meso   438 Jun 16 17:05 modules.nmmb.wcoss
>
>
>
>     Theia:/scratch4/NCEPDEV/meso/save/Dusan.Jovic/nmmb/nems_legacy/NEMS/src/atmos/nmm/tests>ls
>     -la
>     total 1776
>     d-rw------- 1 Dusan.Jovic meso   210236 Jun 23 04:39
>     ./nmm/tests/Compile_theia.log
>     -rw------- 1 Dusan.Jovic meso   113257 Jun 23 14:07
>     ./nmm/tests/Compile_wcoss.log
>     -rwx------ 1 Dusan.Jovic meso     3627 Jun 16 17:49
>     ./nmm/tests/default_vars.sh
>     -rwx------ 1 Dusan.Jovic meso     4642 Jun 16 17:49
>     ./nmm/tests/detect_machine.sh
>     -rw------- 1 Dusan.Jovic meso     1264 Jun 16 17:49
>     ./nmm/tests/filt_vars.txt
>     -rw------- 1 Dusan.Jovic meso    14126 Jun 16 17:49
>     ./nmm/tests/nests.txt
>     -rw------- 1 Dusan.Jovic meso      805 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_bsub.IN
>     -rw------- 1 Dusan.Jovic meso      776 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_bsub.IN_wcoss
>     -rw------- 1 Dusan.Jovic meso      674 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_bsub.IN_yellowstone
>     -rw------- 1 Dusan.Jovic meso    15145 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_fltr_conf_02
>     -rw------- 1 Dusan.Jovic meso    15149 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_fltr_conf_03
>     -rw------- 1 Dusan.Jovic meso    15493 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_fltr_conf.IN
>     -rw------- 1 Dusan.Jovic meso     1153 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_fltr_run.IN
>     -rw------- 1 Dusan.Jovic meso    15149 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_fltr_zombie_conf_03
>     -rw------- 1 Dusan.Jovic meso    15460 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_fltr_zombie_conf.IN
>     -rw------- 1 Dusan.Jovic meso     1153 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_fltr_zombie_run.IN
>     -rw------- 1 Dusan.Jovic meso    15408 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_glob_conf.IN
>     -rw------- 1 Dusan.Jovic meso     1226 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_glob_run.IN
>     -rw------- 1 Dusan.Jovic meso    17189 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_2way_conf_02.IN
>     -rw------- 1 Dusan.Jovic meso    17022 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_2way_conf_03.IN
>     -rw------- 1 Dusan.Jovic meso    17022 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_2way_conf_04.IN
>     -rw------- 1 Dusan.Jovic meso    15488 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_2way_conf.IN
>     -rw------- 1 Dusan.Jovic meso     1984 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_2way_run.IN
>     -rw------- 1 Dusan.Jovic meso    16499 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_conf_02.IN
>     -rw------- 1 Dusan.Jovic meso    16143 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_conf_03.IN
>     -rw------- 1 Dusan.Jovic meso    16143 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_conf_04.IN
>     -rw------- 1 Dusan.Jovic meso    15487 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_conf.IN
>     -rw------- 1 Dusan.Jovic meso     1975 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_mnests_run.IN
>     -rw------- 1 Dusan.Jovic meso      286 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_msub.IN
>     -rw------- 1 Dusan.Jovic meso    15386 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_nests_conf_02.IN
>     -rw------- 1 Dusan.Jovic meso    15386 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_nests_conf_03.IN
>     -rw------- 1 Dusan.Jovic meso    15386 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_nests_conf_04.IN
>     -rw------- 1 Dusan.Jovic meso    15509 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_nests_conf.IN
>     -rw------- 1 Dusan.Jovic meso     1406 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_nests_run.IN
>     -rw------- 1 Dusan.Jovic meso      490 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_qsub.IN
>     -rw------- 1 Dusan.Jovic meso    15407 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_reg_conf.IN
>     -rw------- 1 Dusan.Jovic meso     2246 Jun 16 17:49
>     ./nmm/tests/nmm_conf/nmm_reg_run.IN
>     -r--r--r-- 1 Dusan.Jovic meso     1217 Jun 16 17:49
>     ./nmm/tests/nmm_conf/.svn/entries
>     -rw------- 1 Dusan.Jovic meso   193051 Jun 23 05:08
>     ./nmm/tests/nohup.out
>     -rw------- 1 Dusan.Jovic meso    22763 Jun 23 05:08
>     ./nmm/tests/RegressionTests_theia.log
>     -rw------- 1 Dusan.Jovic meso    21573 Jun 23 14:07
>     ./nmm/tests/RegressionTests_wcoss.log
>     -rw------- 1 Dusan.Jovic meso     4020 Jun 16 17:49
>     ./nmm/tests/rt.conf
>     -rwx------ 1 Dusan.Jovic meso    17610 Jun 16 17:49
>     ./nmm/tests/rt_nmm.sh
>     -rwx------ 1 Dusan.Jovic meso     9038 Jun 16 18:17 ./nmm/tests/rt.sh
>     -rw------- 1 Dusan.Jovic meso    30114 Jun 16 17:49
>     ./nmm/tests/solver_state.txt
>     -r--r--r-- 1 Dusan.Jovic meso      708 Jun 16 17:49
>     ./nmm/tests/.svn/entries
>     -r--r--r-- 1 Dusan.Jovic meso       30 Jun 16 17:49
>     ./nmm/tests/.svn/props/default_vars.sh.svn-work
>     -r--r--r-- 1 Dusan.Jovic meso       30 Jun 16 17:49
>     ./nmm/tests/.svn/props/detect_machine.sh.svn-work
>     -r--r--r-- 1 Dusan.Jovic meso       30 Jun 16 17:49
>     ./nmm/tests/.svn/props/rt_nmm.sh.svn-work
>     -r--r--r-- 1 Dusan.Jovic meso       30 Jun 16 17:49
>     ./nmm/tests/.svn/props/rt.sh.svn-work
>     -rw------- 1 Dusan.Jovic meso     1701 Jun 16 17:48
>     ./nmm/tests/tests/nmm_2way_nests
>     -rw------- 1 Dusan.Jovic meso      836 Jun 16 17:48
>     ./nmm/tests/tests/nmm_2way_nests_debug
>     -rw------- 1 Dusan.Jovic meso     1168 Jun 16 17:48
>     ./nmm/tests/tests/nmm_2way_nests_restart
>     -rw------- 1 Dusan.Jovic meso      798 Jun 16 17:48
>     ./nmm/tests/tests/nmm_cntrl
>     -rw------- 1 Dusan.Jovic meso      701 Jun 16 17:48
>     ./nmm/tests/tests/nmm_decomp
>     -rw------- 1 Dusan.Jovic meso      754 Jun 16 17:48
>     ./nmm/tests/tests/nmm_gfsp
>     -rw------- 1 Dusan.Jovic meso     1634 Jun 16 17:48
>     ./nmm/tests/tests/nmm_mvg_nests
>     -rw------- 1 Dusan.Jovic meso     1834 Jun 16 17:48
>     ./nmm/tests/tests/nmm_mvg_nests_gens
>     -rw------- 1 Dusan.Jovic meso     1233 Jun 16 17:48
>     ./nmm/tests/tests/nmm_mvg_nests_restart
>     -rw------- 1 Dusan.Jovic meso      742 Jun 16 17:48
>     ./nmm/tests/tests/nmm_nemsio
>     -rw------- 1 Dusan.Jovic meso     1070 Jun 16 17:48
>     ./nmm/tests/tests/nmm_nest_rest
>     -rw------- 1 Dusan.Jovic meso     1697 Jun 16 17:48
>     ./nmm/tests/tests/nmm_nests
>     -rw------- 1 Dusan.Jovic meso      916 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_ctl
>     -rw------- 1 Dusan.Jovic meso      524 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_ctl_debug
>     -rw------- 1 Dusan.Jovic meso      616 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_decomp
>     -rw------- 1 Dusan.Jovic meso      951 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_filt
>     -rw------- 1 Dusan.Jovic meso     1000 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_filt_zombie
>     -rw------- 1 Dusan.Jovic meso      700 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_gfsp
>     -rw------- 1 Dusan.Jovic meso      841 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_hur
>     -rw------- 1 Dusan.Jovic meso      638 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_nemsio
>     -rw------- 1 Dusan.Jovic meso      758 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_pcpadj
>     -rw------- 1 Dusan.Jovic meso      861 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_post
>     -rw------- 1 Dusan.Jovic meso      516 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_rst
>     -rw------- 1 Dusan.Jovic meso      505 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_rst_debug
>     -rw------- 1 Dusan.Jovic meso      541 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_rst_nio
>     -rw------- 1 Dusan.Jovic meso      532 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_rst_nio_debug
>     -rw------- 1 Dusan.Jovic meso      776 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_sas_zhao
>     -rw------- 1 Dusan.Jovic meso      801 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_sel_phy
>     -rw------- 1 Dusan.Jovic meso      764 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_spec_adv
>     -rw------- 1 Dusan.Jovic meso      617 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_spec_adv_rst
>     -rw------- 1 Dusan.Jovic meso      786 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_thomp
>     -rw------- 1 Dusan.Jovic meso      817 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_thread
>     -rw------- 1 Dusan.Jovic meso      565 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_timesr
>     -rw------- 1 Dusan.Jovic meso      798 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_wsm6_gfdl
>     -rw------- 1 Dusan.Jovic meso      798 Jun 16 17:48
>     ./nmm/tests/tests/nmm_reg_wsm6_rrtm
>     -rw------- 1 Dusan.Jovic meso      514 Jun 16 17:48
>     ./nmm/tests/tests/nmm_rest
>     -rw------- 1 Dusan.Jovic meso      539 Jun 16 17:48
>     ./nmm/tests/tests/nmm_rest_nio
>     -rw------- 1 Dusan.Jovic meso      807 Jun 16 17:48
>     ./nmm/tests/tests/nmm_thread
>     -r--r--r-- 1 Dusan.Jovic meso     1280 Jun 16 17:49
>     ./nmm/tests/tests/.svn/entries
>     -rw------- 1 Dusan.Jovic meso       79 Jun 16 17:49
>     ./nmm/tests/ts_locations.nml
>
>     & NEMS/tests
>     -rw------- 1 Dusan.Jovic meso 587819 Jun 23 01:31 nohup.out
>
>     Makes it hard to review or compile using nmm/conf, for instance.
>
>     -Eugene
>
>     On Thu, Jun 23, 2016 at 2:26 PM, Dusan Jovic <dusan.jovic at noaa.gov
>     <mailto:dusan.jovic at noaa.gov>> wrote:
>
>         Fixed.
>
>         On 06/23/2016 02:01 PM, Eugene Mirvis wrote:
>         > Dusan,
>         >
>         > There are no reading permission for a # of files in the
>         directories
>         > you've specifies.
>         >
>         > -Eugene
>         >
>         > On 6/23/2016 10:37 AM, Dusan Jovic wrote:
>         >> Hi All,
>         >>
>         >>     I will be making updates to NEMS, NEMSLegacy and nmmb
>         trunks. Changes
>         >> are (mostly) related to making standalone nmmb model. NMMB
>         specific
>         >> physics modules have been moved from src/atmos/phys to the
>         src/atmos/nmm
>         >> directory. All physics modules are now located in a
>         subdirectory
>         >> nmm/nmmbphys (as we discussed on last UMIG meeting) and can
>         be easily
>         >> included in future physics project as external link.
>         >>
>         >> Code passed full regression tests on both machines and my
>         working copies
>         >> are:
>         >>
>         >> /meso/save/Dusan.Jovic/nmmb/nems_legacy
>         >> /scratch4/NCEPDEV/meso/save/Dusan.Jovic/nmmb/nems_legacy
>         >>
>         >> I plan to make commit tomorrow.
>         >>
>         >> Dusan
>         >>
>         >> _______________________________________________
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>         >>
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>         >
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