<div dir="ltr"><div><div><div>Dusan,<br><br></div>There is no straightforward way to pass configuration information to the NEMSAppBuilder. Everyone should use the compile.sh for standalone NEMS FV3 until we replace the NEMS build system. Even the NEMS Compset runner uses the compile.sh for most of its tests.<br><br></div>Sincerely,<br></div>Sam Trahan<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Apr 10, 2017 at 10:13 AM, Dusan Jovic - NOAA Affiliate <span dir="ltr"><<a href="mailto:dusan.jovic@noaa.gov" target="_blank">dusan.jovic@noaa.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><span style="font-size:12.8px">Moorthi,</span><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px"> If you are using standalone FV3, the configuration files already contain DEBUG flag which turns on many debugging compiler flags. Simply run:</span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px"><font face="monospace, monospace">make DEBUG=Y</font></span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px">or if you are using compile script (in the top-level directory of the standalone fv3 repository) </span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px"><font face="monospace, monospace">./compile DEBUG=Y</font></span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px">I'm not sure how this option can be used from NEMS (ie. nems builder). </span></div><span class="HOEnZb"><font color="#888888"><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px">Dusan</span></div></font></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Sun, Apr 9, 2017 at 3:26 PM, James Rosinski - NOAA Affiliate <span dir="ltr"><<a href="mailto:james.rosinski@noaa.gov" target="_blank">james.rosinski@noaa.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>FYI if you are using the Intel compiler, the flag -fpe0 will cause the run to stop when a NaN is generated. Adding "-traceback -g" will give a human-readable traceback when the run aborts.<br><br></div>Jim Rosinski<br><br></div><div class="gmail_extra"><br><div class="gmail_quote">On Sun, Apr 9, 2017 at 10:34 AM, Shian-Jiann Lin - NOAA Federal <span dir="ltr"><<a href="mailto:shian-jiann.lin@noaa.gov" target="_blank">shian-jiann.lin@noaa.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Not sure there is a general way to diagnose NaN, as this can coe from any place.<div>But a helpful option is to set</div><div><br></div><div>no_dycore = .T.</div><div><br></div><div>and run the whole model like multi-column physics only (no FV3) model.</div><div><br></div><div>You may also set fv_debug = .T. to see where the Nan started.</div></div><div class="gmail_extra"><br clear="all"><div><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><span><font color="#888888"><br>Shian-Jiann Lin<br>
NOAA/Geophysical Fluid Dynamics Laboratory<br>
</font></span></div></div></div></div></div>
<br><div class="gmail_quote">On Sun, Apr 9, 2017 at 12:50 PM, Shrinivas Moorthi - NOAA Federal <span dir="ltr"><<a href="mailto:shrinivas.moorthi@noaa.gov" target="_blank">shrinivas.moorthi@noaa.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="auto"><div>SJ,</div><div id="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131AppleMailSignature">Any suggestion on how to track a NAN in fv3?</div><div id="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131AppleMailSignature">Thanks</div><div id="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131AppleMailSignature">Moorthi<br><br>Sent from my iPhone</div><div><br>On Apr 9, 2017, at 1:53 AM, Shian-Jiann Lin - NOAA Federal <<a href="mailto:shian-jiann.lin@noaa.gov" target="_blank">shian-jiann.lin@noaa.gov</a>> wrote:<br><br></div><blockquote type="cite"><div><div>If you only have the raw data with 6 tiles you must perform a cube2latlon regrid.</div><div><br><div class="gmail_quote"><div>On Sun, 9 Apr 2017 at 5:21 AM Ruiyu Sun - NOAA Affiliate <<a href="mailto:ruiyu.sun@noaa.gov" target="_blank">ruiyu.sun@noaa.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg">Hi guys, <br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></div><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></div><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg">Can anyone tell me how to calculate the global zonal mean of cloud condensate based on the 6 nggps3d tile nc files ? <br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></div><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg">Thanks!<br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></div><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg">Ruiyu<br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></div><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><a href="http://nggps3d.tile1.nc" class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" target="_blank">nggps3d.tile1.nc</a>, <br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><a href="http://nggps3d.tile2.nc" class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" target="_blank">nggps3d.tile2.nc</a>,<br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><a href="http://nggps3d.tile3.nc" class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" target="_blank">nggps3d.tile3.nc</a>, <br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><a href="http://nggps3d.tile4.nc" class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" target="_blank">nggps3d.tile4.nc</a>,<br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><a href="http://nggps3d.tile5.nc" class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" target="_blank">nggps3d.tile5.nc</a>, <br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><a href="http://nggps3d.tile6.nc" class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" target="_blank">nggps3d.tile6.nc</a>, </div></div><div class="gmail_extra m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><div class="gmail_quote m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg">On Fri, Apr 7, 2017 at 9:19 AM, Jun Wang - NOAA Affiliate <span class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><<a href="mailto:jun.wang@noaa.gov" class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" target="_blank">jun.wang@noaa.gov</a>></span> wrote:<br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><blockquote class="gmail_quote m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><div class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg">Dear all,<br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></div>This is a test email, please ignore. Thanks.<span class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131m_7870984784518225018HOEnZb m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><font class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" color="#888888"><br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></font></span></div><span class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131m_7870984784518225018HOEnZb m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"><font class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg" color="#888888">Jun<br class="m_5209307066664658033m_-1685408001050068473m_-2269832990582603943m_-6337630025002008131gmail_msg"></font></span></div>
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